Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g02118 ATGGATGAAGATCAAATAGAAGGTTGTGTGAGTGGGTACCTCAAGCAGAAAGGGTTTACGCAAAACGATGACCAACTTCAACTCACCAACACCGATTCATCTCTTCAACCCGACACTCTCAATCGCGCCCAATTGGAGAGAGGTTCTGCTAGATACCATGATGGGTATGGTAGACTAAGATCATGGGCATACAGGTCACTTGACTCATACAAGCATGAGCTGCTGCGTGTGCTTTTTCCACTATTTATCCATTGCTTCATGGATCTTGTGGCAAAAGGGAATCTTCAGGAAGCTTGGAACTTTTTCAATACCTTTCGTGAAGACCATGAAATGATGCATTCGCGAGACCTTCAAAAGTTGGAACTAGTTCTTTCTCCTACTCATTTTAAGGAAATGGAATTCGCTCATTCCCTTAGGCAGAGTAAATTCAACATAAAGATATGTGGGTATTCTTATGAGCTACTGATGCAACATCTACACAGTATGCAATCCACCACAATAATTGGTATTATCAATGAGCACATTAGCTTCCAAGTTACAGCTGGACAACCTAGCTCAACTTCTGATGATCCAGAAGCCGTTTCCCTCATTGGAAACATCAAGGATGAAGCAAACCAGATAAACCAGAAAGAAATACTTTGGGGAATGTTTAAAGACTCTGCAGAAGACTGTGTAGATAAGACTGGGTCCTTGCTTTCAGACACAGAAAAGGGTGAAGGGGAAGGCAAAGAGGGAGAGAATGATGAGATTAAGAAAAGGTCAATTGATGGAGGAAAGCAAGGTAGTTCAATAAAAAAGGCAAAAAAGGACAAGGCTGGCAGTGCAACAGGGAAAAATGCTAAACCAGAAGCTAACACTGTATCTGCAGCACCTCGCATTAAACCAGAGCTACCCTTGCCCACATTTTCAACTGATGTAGAACTTTCCATCCTAGAAGATTTAAGGAATCGTGTACAATTGAGTAGTGTTGCTCTCCCTTCAGTTAACTTCTACACAATTGTAAATACACATAATGGTTTAAGTTGTTCATCAATATCACATGATGGATCATTGATTGCTGGAGGATTTTCTGACTCGTCACTAAAGGTCTGGGATATGGCGAAACTTGAAAAACAACCCACCACTTCTTTTTCACAGGGAGGGAATGACACATCACAAAATGAACAAAATATTGGGCAAAATAGTGGGAAAAGACTGTGCACATTGTTTCAAGGTCATTCAGGGCCAGTTTATGCGGCTACTTTTAGTCCTGCTGGGGATTTTATTCTTTCCTCTTCAGCAGACAAAACAATTCGATTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCAATTTGGGATGTTCAGTTTAGTCCTGCAGGGCATTATTTTGCTAGCTGTTCACATGATAGAACAGCTAGGATTTGGTCCATGGACAGAATACAACCTTTGAGAATAATGGCAGGGCATTTGTCAGATGTTGATTGTGTGCAGTGGCATGTCAACTGCAACTACATTGCTACTGGCTCCAGTGACAAAACAGTTCGATTATGGGATGTACAGAGTGGGGAATGTGTTCGGGTTTTCATTGGTCACAGGAGTATGATTTTATCTTTGGCAATGTCTCCGGACGGTCGCTATATGGCATCTGGTGATGAAGACGGCACCATCATGATGTGGGACCTCTCTAGTGGCTGTTGCGTCACGCCTTTAGTCGGCCACACCTCATGTGTCTGGTCACTCGCTTTCAGTTGTGAAGGTTCTCTTCTAGCATCTGGATCCGCAGATTGCACAGTCAAATTTTGGGATGTAACTACGGGTATAAAGGTTCCAAGGAATGAAGAAAATAGAAGTGGGAATACTAACAGACTCAGATCATTGAAAAGCTTGCCAACCAAATCTGCTTCAGTTTACTCTCTTCAGTTTTGTCGAAGGAATCTTCTATTTGCAGCTGGAGCTATTGCAAAAACTGGCTGA 1977 0.4208 MDEDQIEGCVSGYLKQKGFTQNDDQLQLTNTDSSLQPDTLNRAQLERGSARYHDGYGRLRSWAYRSLDSYKHELLRVLFPLFIHCFMDLVAKGNLQEAWNFFNTFREDHEMMHSRDLQKLELVLSPTHFKEMEFAHSLRQSKFNIKICGYSYELLMQHLHSMQSTTIIGIINEHISFQVTAGQPSSTSDDPEAVSLIGNIKDEANQINQKEILWGMFKDSAEDCVDKTGSLLSDTEKGEGEGKEGENDEIKKRSIDGGKQGSSIKKAKKDKAGSATGKNAKPEANTVSAAPRIKPELPLPTFSTDVELSILEDLRNRVQLSSVALPSVNFYTIVNTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLEKQPTTSFSQGGNDTSQNEQNIGQNSGKRLCTLFQGHSGPVYAATFSPAGDFILSSSADKTIRLWSTKLNANLVCYKGHNYPIWDVQFSPAGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGCCVTPLVGHTSCVWSLAFSCEGSLLASGSADCTVKFWDVTTGIKVPRNEENRSGNTNRLRSLKSLPTKSASVYSLQFCRRNLLFAAGAIAKTG 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g02118 658 Pfam WD domain, G-beta repeat 403 435 IPR001680 GO:0005515
Gma17g02118 658 Pfam WD domain, G-beta repeat 442 477 IPR001680 GO:0005515
Gma17g02118 658 Pfam WD domain, G-beta repeat 523 561 IPR001680 GO:0005515
Gma17g02118 658 Pfam WD domain, G-beta repeat 482 519 IPR001680 GO:0005515
Gma17g02118 658 Pfam WD domain, G-beta repeat 565 603 IPR001680 GO:0005515
Gma17g02118 658 Pfam WD domain, G-beta repeat 334 365 IPR001680 GO:0005515
Gma17g02118 658 Gene3D - 564 657 IPR015943 GO:0005515
Gma17g02118 658 MobiDBLite consensus disorder prediction 230 276 - -
Gma17g02118 658 ProSitePatterns Trp-Asp (WD) repeats signature. 548 562 IPR019775 -
Gma17g02118 658 Gene3D - 246 482 IPR015943 GO:0005515
Gma17g02118 658 CDD TAF5_NTD2 52 181 IPR007582 -
Gma17g02118 658 Gene3D - 483 563 IPR015943 GO:0005515
Gma17g02118 658 PANTHER CANNONBALL-RELATED 1 655 - -
Gma17g02118 658 PRINTS G protein beta WD-40 repeat signature 422 436 IPR020472 -
Gma17g02118 658 PRINTS G protein beta WD-40 repeat signature 506 520 IPR020472 -
Gma17g02118 658 PRINTS G protein beta WD-40 repeat signature 590 604 IPR020472 -
Gma17g02118 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 435 - -
Gma17g02118 658 ProSitePatterns Trp-Asp (WD) repeats signature. 352 366 IPR019775 -
Gma17g02118 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 524 - -
Gma17g02118 658 Gene3D TFIID subunit TAF5, NTD2 domain 29 180 IPR037264 -
Gma17g02118 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 529 565 - -
Gma17g02118 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 529 570 IPR001680 GO:0005515
Gma17g02118 658 ProSitePatterns Trp-Asp (WD) repeats signature. 506 520 IPR019775 -
Gma17g02118 658 MobiDBLite consensus disorder prediction 230 298 - -
Gma17g02118 658 Pfam WD40 associated region in TFIID subunit, NTD2 domain 48 175 IPR007582 -
Gma17g02118 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 445 479 - -
Gma17g02118 658 SUPERFAMILY WD40 repeat-like 327 653 IPR036322 GO:0005515
Gma17g02118 658 ProSitePatterns Trp-Asp (WD) repeats signature. 590 604 IPR019775 -
Gma17g02118 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 445 486 IPR001680 GO:0005515
Gma17g02118 658 SUPERFAMILY Taf5 N-terminal domain-like 43 179 IPR037264 -
Gma17g02118 658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 571 607 - -
Gma17g02118 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 571 612 IPR001680 GO:0005515
Gma17g02118 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 528 IPR001680 GO:0005515
Gma17g02118 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 374 IPR001680 GO:0005515
Gma17g02118 658 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 655 IPR037783 -
Gma17g02118 658 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 435 IPR001680 GO:0005515
Gma17g02118 658 CDD WD40 403 657 - -
Gma17g02118 658 SMART WD40_4 522 561 IPR001680 GO:0005515
Gma17g02118 658 SMART WD40_4 395 435 IPR001680 GO:0005515
Gma17g02118 658 SMART WD40_4 564 603 IPR001680 GO:0005515
Gma17g02118 658 SMART WD40_4 480 519 IPR001680 GO:0005515
Gma17g02118 658 SMART WD40_4 438 477 IPR001680 GO:0005515
Gma17g02118 658 SMART WD40_4 327 365 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g02118 Gma-Chr17 38661313 38681791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g02118 470 657 Miscellaneous Gene Families AT5G08390 28.723 1.97e-22 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g02118 K03130 - gmx:100790500 1319.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g02118 17 38661313 38681791 Gma14g00948 14 10870310 10871322 GST
Gma17g02118 17 38661313 38681791 Gma04g00571 04 5118318 5127521 PCT
Gma17g02118 17 38661313 38681791 Gma06g00557 06 4935063 4942315 PCT
Gma04g00571 04 5118318 5127521 Gma17g02118 17 38661313 38681791 PCT
Gma06g00557 06 4935063 4942315 Gma17g02118 17 38661313 38681791 PCT