Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00571 ATGGAGGACGACAAAATAGTTGGATACGTTACAGCATTCCTTAAGAAGAAAGGCTTCACGCAAACCGAGAAGATTTTCCAAGAAGAATTCCAACACAACAAATCCAACACTTCCAATTCACTTCTCGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAGTATTTCTCTACCTTTTCTCCTCTGCTGACGTGTCACTTCTTCACCACTCTCATAAACCCTATTATGTTGCTTTGCAGATTGGAGACTGGTCCTGCTAGGTTCCACGACGGCTACAGCAGACTAAGAACATGGACTTATTCTTCACTCGATTTGTACAAGCACGAGTTGCTCCGCGTACTTTATCCTGTGTTTATCCACTGCTTTATGGATCTTGTCGCCAAAGGACACGTTCAAGAAGCTCGGAACTTCTTCAATACTTTCCGCGAAGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTAACCATCTTGAGGAAATGGAATTCGCTCACTCGCTTAGAAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTAACCCCTGGACAACCTAGCTTAATTTCCGATGACCCGGAAGCTGTTACCCTAACTGGAAGCAGCCAGGAAGCAGCAAACCTGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAGGCCGGGGCCTTGCTTTTAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGATGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAGGGTGGAAGTGCAACTGGGAAAAGTGCTAAACCAGAAGCTAGCACTGTACCTGCAGCTCCTCGAGTTAAGCCAGAACTCCCCTTGCCCGTAATCCCAACTGAAGTGGAACAGTCCGTCCTGGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGACGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAGGCCAGTTCTCTTTCGCAGGGTGAGAATGACACATCACAAAATGAACAAATATTTGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGGCCTGTTTATGCAGCCTCTTTTAGTCCTGTCGGGGATTTTATCCTTTCATCCTCAGCAGACTCAACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCGTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGATAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTCGTTGGTCACAGGGTTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGCGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTAACACCTTTGATTGGCCACACATCATGTGTCTGGTCCCTTGCTTTCAGTTCTGAAGGTTCTATTATAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATGCGAGCACCAAGGTTTCTAGGGCTGAAGAAAAAAGTGGGAGTGCTAACAGCAGACTTAGATCGCTGAAAACTTTGTCAACCAAATCTACTCCAGTTTACTCATTACGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGCGCTCTATCAAAAAGTGGTTAA 2088 0.443 MEDDKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKSNTSNSLLEPDIANHLLAFSQYFSTFSPLLTCHFFTTLINPIMLLCRLETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPNHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANLINQKEIHWGLLEDSLEERLEKAGALLLDSEKGEGEAKEGENDETKKRSIEGGKQGGASVKKVKKDKGGSATGKSAKPEASTVPAAPRVKPELPLPVIPTEVEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQQASSLSQGENDTSQNEQIFGQGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRVMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSIIASGSADCTVKLWDVNASTKVSRAEEKSGSANSRLRSLKTLSTKSTPVYSLRFSRRNLLFAAGALSKSG 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00571 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 608 642 - -
Gma04g00571 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 516 - -
Gma04g00571 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 440 472 IPR001680 GO:0005515
Gma04g00571 695 Gene3D - 519 604 IPR015943 GO:0005515
Gma04g00571 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 566 607 IPR001680 GO:0005515
Gma04g00571 695 SUPERFAMILY Taf5 N-terminal domain-like 74 217 IPR037264 -
Gma04g00571 695 SMART WD40_4 475 514 IPR001680 GO:0005515
Gma04g00571 695 SMART WD40_4 433 472 IPR001680 GO:0005515
Gma04g00571 695 SMART WD40_4 559 598 IPR001680 GO:0005515
Gma04g00571 695 SMART WD40_4 364 403 IPR001680 GO:0005515
Gma04g00571 695 SMART WD40_4 517 556 IPR001680 GO:0005515
Gma04g00571 695 SMART WD40_4 601 640 IPR001680 GO:0005515
Gma04g00571 695 MobiDBLite consensus disorder prediction 269 333 - -
Gma04g00571 695 ProSitePatterns Trp-Asp (WD) repeats signature. 627 641 IPR019775 -
Gma04g00571 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 649 IPR001680 GO:0005515
Gma04g00571 695 Gene3D - 354 518 IPR015943 GO:0005515
Gma04g00571 695 MobiDBLite consensus disorder prediction 269 293 - -
Gma04g00571 695 ProSitePatterns Trp-Asp (WD) repeats signature. 585 599 IPR019775 -
Gma04g00571 695 Gene3D - 605 694 IPR015943 GO:0005515
Gma04g00571 695 CDD TAF5_NTD2 86 218 IPR007582 -
Gma04g00571 695 ProSitePatterns Trp-Asp (WD) repeats signature. 543 557 IPR019775 -
Gma04g00571 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 566 603 - -
Gma04g00571 695 PANTHER CANNONBALL-RELATED 3 694 - -
Gma04g00571 695 Pfam WD domain, G-beta repeat 519 556 IPR001680 GO:0005515
Gma04g00571 695 Pfam WD domain, G-beta repeat 560 598 IPR001680 GO:0005515
Gma04g00571 695 Pfam WD domain, G-beta repeat 437 472 IPR001680 GO:0005515
Gma04g00571 695 Pfam WD domain, G-beta repeat 602 640 IPR001680 GO:0005515
Gma04g00571 695 Pfam WD domain, G-beta repeat 373 403 IPR001680 GO:0005515
Gma04g00571 695 Pfam WD domain, G-beta repeat 479 514 IPR001680 GO:0005515
Gma04g00571 695 ProSitePatterns Trp-Asp (WD) repeats signature. 390 404 IPR019775 -
Gma04g00571 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 524 561 - -
Gma04g00571 695 MobiDBLite consensus disorder prediction 300 314 - -
Gma04g00571 695 Gene3D TFIID subunit TAF5, NTD2 domain 71 217 IPR037264 -
Gma04g00571 695 PRINTS G protein beta WD-40 repeat signature 627 641 IPR020472 -
Gma04g00571 695 PRINTS G protein beta WD-40 repeat signature 459 473 IPR020472 -
Gma04g00571 695 PRINTS G protein beta WD-40 repeat signature 543 557 IPR020472 -
Gma04g00571 695 Pfam WD40 associated region in TFIID subunit, NTD2 domain 84 212 IPR007582 -
Gma04g00571 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 524 565 IPR001680 GO:0005515
Gma04g00571 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 404 IPR001680 GO:0005515
Gma04g00571 695 SUPERFAMILY WD40 repeat-like 365 691 IPR036322 GO:0005515
Gma04g00571 695 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 3 694 IPR037783 -
Gma04g00571 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 523 IPR001680 GO:0005515
Gma04g00571 695 CDD WD40 440 690 - -
Gma04g00571 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 440 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00571 Gma-Chr4 5118318 5127521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00571 566 691 Miscellaneous Gene Families AT5G08390 24.409 9.94e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00571 K03130 - gmx:100805953 1304.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00571 04 5118318 5127521 Gma06g00557 06 4935063 4942315 GST
Gma17g02118 17 38661313 38681791 Gma04g00571 04 5118318 5127521 PCT
Gma14g00948 14 10870310 10871322 Gma04g00571 04 5118318 5127521 PCT
Gma04g00571 04 5118318 5127521 Gma17g02118 17 38661313 38681791 PCT
Gma04g00571 04 5118318 5127521 Gma14g00948 14 10870310 10871322 PCT