Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00557 ATGGAGGACGAGAAAATAGTTGGATACGTTACGGCGTTCCTTAAGAAGAAAGGCTTCACGCAAACCGAGAAGATTTTCCAGGAAGAATTCCAACACAACAAGTCCAACACTTCTAATTCCGTTCTGGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGACTGGTCCTGCTAGGTTCCACGACGGCTATAGCAGACTAAGAACATGGACTTATTCTTCACTCGATTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCGGTGTTTATCCACTGCTTCATGGATCTTGTCGCCAAAGGACATGTTCAAGAAGCTCGGAACTTCTTCAATACTTTCCGCGAAGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTCTCTCCTAATCATCTCGAGGAAATGGAATTTGCTCACTCGCTTAGAAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTTTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTAACCCCTGGTCAACCTAGCTTAATTTCCGATGATCCGGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCAGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAAGCCGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGACGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAAGGTGGAAGTGCAACTGGAAAAAGTGCAAAACCTGAAGCTAACACCATACCTTCAGCTCCTCGAGTTAAGCCAGAACTCCCTTTGCCCGTAATCCCAGCTGAGGCGGAACAGTCCGTCCTTGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACTCATAATGGTTTAAGCTGTTCTTCAATATCCCATGACGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAACAGACCAGTTCTCTTTCGCAGGGTGAGAATGAACAAATATTTGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGCCCTGTTTATGCAGCCTCTTTTAGTCCTGTCGGAGATTTTATCCTTTCATCCTCAGCAGACTCGACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTGGGGCATTATTTTGCCAGCTCGTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGATAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTCGTTGGCCACAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGCGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCTTTGATTGGGCACACATCATGTGTCTGGTCCCTCGCTTTCAGTTCTGAAGGTTCTGTGATAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATACGAGCACCAAGGTTTCTAGGGCTGAAGAAAAAGGTGGGAGTGCTAACAGACTTAGATCGCTGAAAACTCTACCAACCAAATCTACTCCAGTTTACTCATTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGTGCTCTATCAAAAAGTGGCTAA 1992 0.4473 MEDEKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKSNTSNSVLEPDIANHLLAFSQLETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPNHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANQINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGEAKEGENDETKKRSIEGGKQGASVKKVKKDKGGSATGKSAKPEANTIPSAPRVKPELPLPVIPAEAEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQQQTSSLSQGENEQIFGQGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSVIASGSADCTVKLWDVNTSTKVSRAEEKGGSANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKSG 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00557 663 PANTHER CANNONBALL-RELATED 3 662 - -
Gma06g00557 663 MobiDBLite consensus disorder prediction 241 306 - -
Gma06g00557 663 SMART WD40_4 402 441 IPR001680 GO:0005515
Gma06g00557 663 SMART WD40_4 528 567 IPR001680 GO:0005515
Gma06g00557 663 SMART WD40_4 444 483 IPR001680 GO:0005515
Gma06g00557 663 SMART WD40_4 570 609 IPR001680 GO:0005515
Gma06g00557 663 SMART WD40_4 486 525 IPR001680 GO:0005515
Gma06g00557 663 SMART WD40_4 337 376 IPR001680 GO:0005515
Gma06g00557 663 Gene3D TFIID subunit TAF5, NTD2 domain 40 191 IPR037264 -
Gma06g00557 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 409 441 IPR001680 GO:0005515
Gma06g00557 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 451 485 - -
Gma06g00557 663 ProSitePatterns Trp-Asp (WD) repeats signature. 554 568 IPR019775 -
Gma06g00557 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 577 618 IPR001680 GO:0005515
Gma06g00557 663 ProSitePatterns Trp-Asp (WD) repeats signature. 596 610 IPR019775 -
Gma06g00557 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 377 IPR001680 GO:0005515
Gma06g00557 663 Gene3D - 489 569 IPR015943 GO:0005515
Gma06g00557 663 Gene3D - 233 488 IPR015943 GO:0005515
Gma06g00557 663 MobiDBLite consensus disorder prediction 241 287 - -
Gma06g00557 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 493 530 - -
Gma06g00557 663 ProSitePatterns Trp-Asp (WD) repeats signature. 363 377 IPR019775 -
Gma06g00557 663 Gene3D - 570 662 IPR015943 GO:0005515
Gma06g00557 663 SUPERFAMILY Taf5 N-terminal domain-like 48 191 IPR037264 -
Gma06g00557 663 CDD WD40 409 658 - -
Gma06g00557 663 ProSitePatterns Trp-Asp (WD) repeats signature. 512 526 IPR019775 -
Gma06g00557 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 577 612 - -
Gma06g00557 663 Pfam WD domain, G-beta repeat 529 567 IPR001680 GO:0005515
Gma06g00557 663 Pfam WD domain, G-beta repeat 448 483 IPR001680 GO:0005515
Gma06g00557 663 Pfam WD domain, G-beta repeat 571 609 IPR001680 GO:0005515
Gma06g00557 663 Pfam WD domain, G-beta repeat 488 525 IPR001680 GO:0005515
Gma06g00557 663 Pfam WD domain, G-beta repeat 406 441 IPR001680 GO:0005515
Gma06g00557 663 Pfam WD domain, G-beta repeat 346 376 IPR001680 GO:0005515
Gma06g00557 663 CDD TAF5_NTD2 60 192 IPR007582 -
Gma06g00557 663 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Gma06g00557 663 SUPERFAMILY WD40 repeat-like 338 659 IPR036322 GO:0005515
Gma06g00557 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 451 492 IPR001680 GO:0005515
Gma06g00557 663 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 3 662 IPR037783 -
Gma06g00557 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 535 572 - -
Gma06g00557 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 409 441 - -
Gma06g00557 663 Pfam WD40 associated region in TFIID subunit, NTD2 domain 58 186 IPR007582 -
Gma06g00557 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 493 534 IPR001680 GO:0005515
Gma06g00557 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 535 576 IPR001680 GO:0005515
Gma06g00557 663 PRINTS G protein beta WD-40 repeat signature 428 442 IPR020472 -
Gma06g00557 663 PRINTS G protein beta WD-40 repeat signature 512 526 IPR020472 -
Gma06g00557 663 PRINTS G protein beta WD-40 repeat signature 596 610 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00557 Gma-Chr6 4935063 4942315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g00557 535 659 Miscellaneous Gene Families AT5G08390 24.603 2.08e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00557 K03130 - gmx:100781563 1291.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00571 04 5118318 5127521 Gma06g00557 06 4935063 4942315 GST
Gma17g02118 17 38661313 38681791 Gma06g00557 06 4935063 4942315 PCT
Gma14g00948 14 10870310 10871322 Gma06g00557 06 4935063 4942315 PCT
Gma06g00557 06 4935063 4942315 Gma17g02118 17 38661313 38681791 PCT
Gma06g00557 06 4935063 4942315 Gma14g00948 14 10870310 10871322 PCT