Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01946 ATGGCCACTACTCTTTCTGAAGCCTATAGGGACCACCCTCTCCACCTTCATCATATTATCCCCTTAGACTTTTCTTCACTTAGGACCTTACCTGATTCGCATGCATGGCCTCAATCTGAAGATGGTGATGGTGATGATGATAATCATGGAATTGGATCACCCATACCCATCATAGACCTAATGGATCCTAATGCCATGGAACTCATAGGCCTTGCTTGTGAGAATTGGGGTGCTTTCCAATTGAAGAACCATGGCATACCCTTGAGTGTTGTTGAAGAGGTTGAAGAAGAGGCAAAGAGGCTCTTTGCCCTCCCCGCCGACCGGAAACTCAAGGCGTTGAGATCGGCCACCGGTGCCACCGGGTACGGCCGAGCTCGGATATCGCCATTCTTCCCCAAGCACATGTGGCATGAAGGATTTACCATCATGGGGTCTCCATGTGATGATGCCAAAAAGATTTGGCCTAATGACTATGCACCCTTTTGCACTATAATGGACAATTACCAGAAGCAAATGAAGGCTCTAGCAGATAAGCTAGCACACATGATATTCAACTTATTGGGGGGCATTTCTGAGGAGCAAAAAAGGTGGATTAATGGTTCAACCAACAACCTCTGTGAAGCTGTTCAGCTAAACTTCTACCCTCGTTGTCCTGAGCCAAACCGAGCCATGGGGCTAGCCCCTCACACTGACACTTCCCTTCTCACAATCCTCCACCAAAGCCAAACCAATGGCCTCCAAATCTTCAAGGAAGGGGCAGGGTGGGTCCCTGTGCACCCTCACCCTAGCAGCCTTGTTGTTCACACTGGTGACATTCTTCACATCTTGTCCAACTCAAGGTTTAGATGTGCATTGCATCGTGTCATGGTGAATAGCGCAAGGGAAAGATACTCAGTGGCTTATTTCTATGGTCCCCCTGTGGATCATGTGGTTTCTCCTTTGGTTCTTGATTCCTTGCCTCGTTTTCGTTCCTTGACTGTGAAGGAGTATATTGGTATTAAGGCCAAGAACCTTCGGGGAGCATTGTCTTTGATTAGTATGCTTAAAAACTAA 1053 0.4748 MATTLSEAYRDHPLHLHHIIPLDFSSLRTLPDSHAWPQSEDGDGDDDNHGIGSPIPIIDLMDPNAMELIGLACENWGAFQLKNHGIPLSVVEEVEEEAKRLFALPADRKLKALRSATGATGYGRARISPFFPKHMWHEGFTIMGSPCDDAKKIWPNDYAPFCTIMDNYQKQMKALADKLAHMIFNLLGGISEEQKRWINGSTNNLCEAVQLNFYPRCPEPNRAMGLAPHTDTSLLTILHQSQTNGLQIFKEGAGWVPVHPHPSSLVVHTGDILHILSNSRFRCALHRVMVNSARERYSVAYFYGPPVDHVVSPLVLDSLPRFRSLTVKEYIGIKAKNLRGALSLISMLKN 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01946 350 Gene3D - 17 338 IPR027443 -
Gma17g01946 350 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 12 341 - -
Gma17g01946 350 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 155 IPR026992 -
Gma17g01946 350 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 202 305 IPR005123 -
Gma17g01946 350 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 341 - -
Gma17g01946 350 MobiDBLite consensus disorder prediction 33 53 - -
Gma17g01946 350 SUPERFAMILY Clavaminate synthase-like 17 339 - -
Gma17g01946 350 Pfam 2OG-Fe(II) oxygenase superfamily 208 305 IPR044861 -
Gma17g01946 350 PRINTS Isopenicillin N synthase signature 69 86 - -
Gma17g01946 350 PRINTS Isopenicillin N synthase signature 229 250 - -
Gma17g01946 350 PRINTS Isopenicillin N synthase signature 265 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01946 Gma-Chr17 34573493 34575850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01946 55 341 Glycosyltransferase AT5G59530 31.310 3.99e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01946 K04124 - gmx:100808546 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01946 17 34573493 34575850 Gma14g01142 14 17729812 17732168 GST
Gma17g01946 17 34573493 34575850 Gma04g00652 04 6015614 6017611 PCT
Gma17g01946 17 34573493 34575850 Gma06g00645 06 5838940 5840744 PCT