Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01379 ATGTTATACGACAACTGCAACAACGACAATGGAAGTAACAATAACAACAACAATATCAATTCTCGAAAGAGAGGAAGAGAAGATCAACCGGGTGTTGGCAACAACAACAACAACACAATCACTACAGCTTCAAATGTTATCAATCAATTTTCTTTGCAATCTCAGCCTCTGCAACTCGTTCATCTCTCTCAGCTCCACAATCACCAACAACAAAATAATGTGGTCTCCACTGGCCTACGCTTATCCTTCGATGACCAACACTTTCAACAACAACAAAGACTACAACTTCATCAAAATCAATCTCAACAACAACAACAACATGGGTCTCAATCTTCTGCTTTCTTATCTCTATTATCCCAAGGCTTGGGTTCTCAAATCAAACAACAGCGTGATGAGATTGACCAATTACTCCATGCCCAGGCAGAGCAACTGCGGCGGGCATTGGCTGAGAAGAGGCAGAGGCATTACCGCGCGCTGCTGAGCACGGCGGAGGAGGCGGTGGCGCGTAGGCTCAGAGAGAAGGAAGCGGAAGTGGAAATGGCCACGCGCAAGAACGCGGAATTAGAAGCACGCGCGGCCAAGCTGAGCGTGGAGGCCCAAGTGTGGCAGGCCAAGGCCAGGGCCCAAGAGGCGACGGCAGCCTCCCTCCAGGCCCAACTGCAGCAGACAATAATGTCCCATGGCGGCGAAGAACTCGCCGCCGTGGGCGTATCGTCTGCTGTTGAGGGCCAGGCGGAAGACGCGGAGTCCGCCTACATCGACCCGGAACGTGTCGTTGTTGCCACGACGGCGCGTCCCAAATGCCGAGGGTGCGCAAAGCGCGTGGCCTCGGTGGTCGTTTTGCCGTGTCGGCACTTGTGTATCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCGGTTTGTCTCACCCTAAAGAATTCAACCGTTGAAGTTTTTCTCTCTTGA 948 0.5211 MLYDNCNNDNGSNNNNNNINSRKRGREDQPGVGNNNNNTITTASNVINQFSLQSQPLQLVHLSQLHNHQQQNNVVSTGLRLSFDDQHFQQQQRLQLHQNQSQQQQQHGSQSSAFLSLLSQGLGSQIKQQRDEIDQLLHAQAEQLRRALAEKRQRHYRALLSTAEEAVARRLREKEAEVEMATRKNAELEARAAKLSVEAQVWQAKARAQEATAASLQAQLQQTIMSHGGEELAAVGVSSAVEGQAEDAESAYIDPERVVVATTARPKCRGCAKRVASVVVLPCRHLCICTECDAHFRACPVCLTLKNSTVEVFLS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01379 315 MobiDBLite consensus disorder prediction 1 40 - -
Gma17g01379 315 MobiDBLite consensus disorder prediction 90 112 - -
Gma17g01379 315 Pfam Zinc finger, C3HC4 type (RING finger) 267 303 - -
Gma17g01379 315 MobiDBLite consensus disorder prediction 1 20 - -
Gma17g01379 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 315 IPR013083 -
Gma17g01379 315 Coils Coil 164 205 - -
Gma17g01379 315 ProSiteProfiles Zinc finger RING-type profile. 268 302 IPR001841 -
Gma17g01379 315 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 16 314 - -
Gma17g01379 315 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 16 314 IPR017066 -
Gma17g01379 315 PIRSF SBP1_RNase_bind 1 315 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01379 Gma-Chr17 12742775 12744646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g01379 268 304 Miscellaneous Gene Families AT2G21380 37.838 2.14e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01379 K19042 - gmx:100788924 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g01379 17 12742775 12744646 Gma17g01379 17 12742775 12744646 ECH
Gma17g01379 17 12742775 12744646 Gma05g00642 05 7013230 7014680 GST
Gma01g02059 01 55966503 55968597 Gma17g01379 17 12742775 12744646 PCT
Gma11g00357 11 2873977 2875767 Gma17g01379 17 12742775 12744646 PCT
Gma17g01379 17 12742775 12744646 Gma01g02059 01 55966503 55968597 PCT
Gma17g01379 17 12742775 12744646 Gma11g00357 11 2873977 2875767 PCT