Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00642 ATGGCCGTTCAAGCTCAATATCCATCCAATGTCCTTCTTCTAAACAGCAGAAACGGGCAAGAAGAGCATGAGTATTCTTCATTGCAACCACAACCAGGAGGAGTTGTACTCTTGAATCAGCCTCACATGTTATACAACATCAATGACAATGGAAGTAACAATAACAACAACAATACCAATTCTCGGAAGAGAGGTAGAGAAGACCCGGGTGTTGGCAACAACACAATCACTGCAGCTTCTAATGTTATCGATCAATTCTCTTTACAATCTCAGCCTCCGCAACTTGTTCATCTCTCTCAGCTCCACAATCACCACCAACAACAAAATAATGTGGTGTCCACTGGCCTTCGCTTATCCTTCGATGACCAACACTTTCAACAACAACAAAGACTACAACTTCATCAAAATGAATCTCAACAACATAGGTCCCACTCTTCTGCTTTCTTATCTCTATTATCCCAAGGCTTGGGTTCTCAAATCAAACAACAGCGCGATGAGATTGATCAATTGCTCCATGCCCAGGGAGAGCAACTGCGGCGGGCATTGGCGGAGAAGAGGCAGAGACATTACCGCGCGCTGCTGAGCGCGGCGGAGGAGGCGGTGGCGCGACAGCTCAGAGAGAAGGAAGCGGAAGTGGAAATGGCCACGCGCAAGAACGCGGAGTTGGAAGCACGCGCGGCCAAGCTGAGCGTGGAGGCCCAGGTGTGGCAGGCTAAGGCCCGGGCCCAAGAGGCTACGGCAGTCTCCCTCCAGACCAAACTGCAGCAGACGATACTGTCCCACGGCGGCGAAGATCCTGCTGTCGTGGGCGTTTCATCTGCTGCTGTAGAGGGACAGGCGGAGGACGCGGAGTCCGCCTACATCGACCCCGACCGCGTGGTGGCTGCCACGGCGGCGCGTCCCAAATGCCGAGGGTGCGCAAAGCGCGTGGCCTCGGTGGTCGTTTTGCCGTGTCGGCACTTGTGCGTCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCAGTTTGTCTCACCCCAAAGAATTCAACCGTTGAAGTTTTTCTCTCTTAA 1053 0.528 MAVQAQYPSNVLLLNSRNGQEEHEYSSLQPQPGGVVLLNQPHMLYNINDNGSNNNNNNTNSRKRGREDPGVGNNTITAASNVIDQFSLQSQPPQLVHLSQLHNHHQQQNNVVSTGLRLSFDDQHFQQQQRLQLHQNESQQHRSHSSAFLSLLSQGLGSQIKQQRDEIDQLLHAQGEQLRRALAEKRQRHYRALLSAAEEAVARQLREKEAEVEMATRKNAELEARAAKLSVEAQVWQAKARAQEATAVSLQTKLQQTILSHGGEDPAVVGVSSAAVEGQAEDAESAYIDPDRVVAATAARPKCRGCAKRVASVVVLPCRHLCVCTECDAHFRACPVCLTPKNSTVEVFLS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00642 350 PIRSF SBP1_RNase_bind 1 350 IPR017066 -
Gma05g00642 350 Coils Coil 198 239 - -
Gma05g00642 350 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 349 IPR017066 -
Gma05g00642 350 ProSiteProfiles Zinc finger RING-type profile. 303 337 IPR001841 -
Gma05g00642 350 Pfam Zinc finger, C3HC4 type (RING finger) 302 342 - -
Gma05g00642 350 MobiDBLite consensus disorder prediction 46 74 - -
Gma05g00642 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 350 IPR013083 -
Gma05g00642 350 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 349 - -
Gma05g00642 350 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00642 Gma-Chr5 7013230 7014680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00642 303 350 Miscellaneous Gene Families AT2G21380 33.333 2.18e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00642 K19042 - gmx:100788122 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00642 05 7013230 7014680 Gma05g00642 05 7013230 7014680 ECH
Gma17g01379 17 12742775 12744646 Gma05g00642 05 7013230 7014680 GST
Gma01g02059 01 55966503 55968597 Gma05g00642 05 7013230 7014680 PCT
Gma11g00357 11 2873977 2875767 Gma05g00642 05 7013230 7014680 PCT
Gma05g00642 05 7013230 7014680 Gma01g02059 01 55966503 55968597 PCT
Gma05g00642 05 7013230 7014680 Gma11g00357 11 2873977 2875767 PCT