Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g02059 ATGGCCGTTCAAGCTCAATACCCTTCCAATGTACTACTCTTCCTAAACAGCAAAACCGGGCAAGAAGCACATGATTATTCATTGCAATCTCCGCCAGGACAACAACTCCTTGATCAATCCCATATGCTATTCAACAACGGAGGTACTAATTCTCGAAAGAGAGGAAGAGAAACAACTGCAGCTACCGGGATTGCGCCAAACGTTATCAATTCATTCTCTTTGCAATCCCAATCTCCACAGGCACAGCTCATAGACCTCACTCAACTTCATAATCAAAATGTAGTCTCCACCGGGTTACGCTTATCCTTTGGTGACCAACAACAACAAAGACAACAATTACAACATCAACATCAACATCATGGGTGTCACTCCTCTCCTTTCGTATCTCTACTATCCGAAGGCTTGTCTTCTCAAATCAAACAACAGCGTGACGAAATAGACCAATTCCTTCAAGCCCAGGAGGAGCAATTGCGGCGGGCATTAGCGGAGAAGAGACAGAGACATTATCGGACGCTGCTAAGGGCAGCGGAGGAATCGGTGTTGCGGAGGCTGAGGGAGAAGGAAGCGGAGTTGGAGAAAGCCACGCGCCATAACGCGGAGTTGGAGGCACGCGCGACGCAGCTTAGCGTTGAGGCGCAGCTTTGGCAGGCGAGGGCGAAGGCGCAGGAAGCAACGGCGGCGGCGTTGCAGGCGCAGCTGCAGCAGGCTATGATGAGCGGCGACGGTGAGAACGGTGGCGGGGGAGGGCTATCGTGCGCCGGGGGCGGAGCGGAGGATGCTGAGTCAGCGTACGTTGACCCGGATCGAGTGGGTCCCACTCCGAAATGCAGAGGGTGCGCGAAACGGGTGGCTTCGGTGGTGGTGTTGCCGTGTCGCCACCTATGCATCTGCGCCGAATGCGACACGCATTTTCGGGCGTGCCCCGTTTGCCTCACCGTTAAAAATTCAACCGTTGAAGTCTATCTATCTTAA 972 0.5329 MAVQAQYPSNVLLFLNSKTGQEAHDYSLQSPPGQQLLDQSHMLFNNGGTNSRKRGRETTAATGIAPNVINSFSLQSQSPQAQLIDLTQLHNQNVVSTGLRLSFGDQQQQRQQLQHQHQHHGCHSSPFVSLLSEGLSSQIKQQRDEIDQFLQAQEEQLRRALAEKRQRHYRTLLRAAEESVLRRLREKEAELEKATRHNAELEARATQLSVEAQLWQARAKAQEATAAALQAQLQQAMMSGDGENGGGGGLSCAGGGAEDAESAYVDPDRVGPTPKCRGCAKRVASVVVLPCRHLCICAECDTHFRACPVCLTVKNSTVEVYLS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g02059 323 ProSiteProfiles Zinc finger RING-type profile. 276 310 IPR001841 -
Gma01g02059 323 PIRSF SBP1_RNase_bind 1 323 IPR017066 -
Gma01g02059 323 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 1 322 - -
Gma01g02059 323 Pfam Zinc finger, C3HC4 type (RING finger) 275 312 - -
Gma01g02059 323 Coils Coil 139 163 - -
Gma01g02059 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 323 IPR013083 -
Gma01g02059 323 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 322 IPR017066 -
Gma01g02059 323 Coils Coil 174 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g02059 Gma-Chr1 55966503 55968597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g02059 276 312 Miscellaneous Gene Families AT2G21380 37.838 4.75e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g02059 K19042 - gmx:100797727 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g02059 01 55966503 55968597 Gma11g00357 11 2873977 2875767 GST
Gma01g02059 01 55966503 55968597 Gma17g01379 17 12742775 12744646 PCT
Gma01g02059 01 55966503 55968597 Gma05g00642 05 7013230 7014680 PCT
Gma17g01379 17 12742775 12744646 Gma01g02059 01 55966503 55968597 PCT
Gma05g00642 05 7013230 7014680 Gma01g02059 01 55966503 55968597 PCT