Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g01202 ATGAACAACACCAACAACATTAACAACATCAACACCAACCCAACCAAGAATGCCGCAACACCGTCGTTTTTCACCAACCCCGGAGCACCCTCCATCCCCATGAACCACCCACAACCCCACCTTCTCTCACAGACGCAGCCTCAACCACAAGGTGCCACGTCACACTTTCACGGCCACTTTCAGCTTTCACAACCCCAAACCCACGTCGTCGCACAGCAACAACATCAACAACAACAACCACACCCTCACCCACAAGTGCACAACAATGCCAACACCAACGCCCACGTGGCAGCACCCACACCACCCAAGCGTGCAAATCAGAAACCCCCTTCACGCCCTCAAGGCTCCTCCAACGCTACCCAATCCTCTGCGTTCAAGACCATGGAACTCACCGTTGCGCCGCCGCGGAAAAAGAGAAGCTTTCCCGGTAACCTGATTCCAGAAAAAGTGGCCAAGCTTGTTCCAGAATCCGCAATCTACGCCAAGTTGCTCGAACTCGAGACTCAGATAGATTCTGCTTTGGCCAGGAAGAAAATTGATGTGCAGGCGAATGTTAGAAACCCTCGCTGCGTTAGGAAAACGCTTAGAGTTTATGTTTATAACACTTTTTCGAATCAGGTGAAAGTGGAGACTGGGAAGAATGGTGTGGAGGAGCCTTCTTGGGCTCTGAGGATAACTGGAAGGGTGTTGGAAGATGGTAATGGAAAGGATTCTGTGGCGGAAGGAATTTCGACGAAGGAATATCCAAAATTCTCGGCTTTCTTTAAGAAGATTACCATATACTTGGATCAGGGTTTGTACCAGGATAACCATGTTGTTGTGTGGGATAGTGCTCATTCGGCGGCTGCGCAGCAGCGTGATGGTTTTGAGGTGAAGAGGAAAGGAGATAAGGAATTCACTGCGGTGGTTAGGATGGCGATGAATTATTCGCCTGACAAGTTTGTGGTTTCACCGCAACTGGCTAGAGTTTTAGGGGTTGAGTTTGACTCGCGCTGCAGGATCATAGCTGCTCTTTGGCACTATGTGAAGGCTAAGAAGCTGCAGAGTCCCAATGACCCTTCGTTCTTCATGTGTGATGCTTCTCTCCAGAGGGTGTTTGGGGAGGAGAAGATGAAATTCTCTGTGGCTTCGCAGAAGATATCGCAGCATTTGTCACACCCGCAGCCTATACACCTGGAGCATAAAATAAAGCTTTCTGGAAATGGTCCAGCCGGAAGTACTTGCTATGATGTGCAGGTTGATGTGCCTCTTCCACTTGAGAAGGATATGTCTGCGTTCTTGGCAAGCACTGAGAGGCACAAAGATATTGATACTTTTGATGAATTGATCTCTGATTCGATAAAGAAGATTCATGAACATCATAGGAGACGGGCATTCTTTCTCGGCTTTAGTCAGTCCCCAGCAGAGTTTATTAATGCCTTGATAGCTTCTCAGAGCAAGGATCTGAAGCTCGTTGCTGGAGATGTGAGCCAGAATACTGAAAATGAACGACGTGCTGAATTCTACAATCAACCGTGGGTTGAGGATGCTGTTATTCGCTACCTGACCCGGAAAAATGCTCGAAGTGATGCTCCTTGA 1578 0.4842 MNNTNNINNINTNPTKNAATPSFFTNPGAPSIPMNHPQPHLLSQTQPQPQGATSHFHGHFQLSQPQTHVVAQQQHQQQQPHPHPQVHNNANTNAHVAAPTPPKRANQKPPSRPQGSSNATQSSAFKTMELTVAPPRKKRSFPGNLIPEKVAKLVPESAIYAKLLELETQIDSALARKKIDVQANVRNPRCVRKTLRVYVYNTFSNQVKVETGKNGVEEPSWALRITGRVLEDGNGKDSVAEGISTKEYPKFSAFFKKITIYLDQGLYQDNHVVVWDSAHSAAAQQRDGFEVKRKGDKEFTAVVRMAMNYSPDKFVVSPQLARVLGVEFDSRCRIIAALWHYVKAKKLQSPNDPSFFMCDASLQRVFGEEKMKFSVASQKISQHLSHPQPIHLEHKIKLSGNGPAGSTCYDVQVDVPLPLEKDMSAFLASTERHKDIDTFDELISDSIKKIHEHHRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDVSQNTENERRAEFYNQPWVEDAVIRYLTRKNARSDAP 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g01202 525 MobiDBLite consensus disorder prediction 109 128 - -
Gma17g01202 525 CDD SWIB_like 316 384 - -
Gma17g01202 525 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 84 525 - -
Gma17g01202 525 Gene3D SWIB/MDM2 domain 306 391 IPR036885 -
Gma17g01202 525 SMART swib_2 310 389 IPR019835 -
Gma17g01202 525 MobiDBLite consensus disorder prediction 1 143 - -
Gma17g01202 525 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 84 525 - -
Gma17g01202 525 SUPERFAMILY SWIB/MDM2 domain 305 394 IPR036885 -
Gma17g01202 525 MobiDBLite consensus disorder prediction 1 96 - -
Gma17g01202 525 Pfam SWIB/MDM2 domain 313 384 IPR003121 -
Gma17g01202 525 ProSiteProfiles SWIB/MDM2 domain profile. 309 386 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g01202 Gma-Chr17 10574668 10577293 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma17g01202 SWIB 5.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g01202 K11650 - gmx:100817271 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00447 05 4264837 4267338 Gma17g01202 17 10574668 10577293 ECH
Gma17g01202 17 10574668 10577293 Gma17g01202 17 10574668 10577293 ECH
Gma17g01202 17 10574668 10577293 Gma05g00447 05 4264837 4267338 GST
Gma17g01202 17 10574668 10577293 Gma04g01891 04 49177525 49179615 PCT
Gma17g01202 17 10574668 10577293 Gma06g01520 06 14648630 14650749 PCT
Gma04g01891 04 49177525 49179615 Gma17g01202 17 10574668 10577293 PCT
Gma06g01520 06 14648630 14650749 Gma17g01202 17 10574668 10577293 PCT