Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00447 ATGAACAACACCAACCCAACCAAGAATGCTGCAACGCCGTCGTTTTTCACCAACCCTGGAACACCCTCCATCCCCATGAACCACCTTCTCTCCCAAACGCAGCCTCAACCACAAGGTGCCACGTCACACTTCCACGGCCACTTTCAGCTTTCACAACCCCAAACCCACGTGCTCGCACCACAACAACAGCCACACCCTCATCCTCATCCTCAAGTGCACAACAATGCAAACACCAACGCCCACGTGGCAGCACCCACACCTCCCAAGCGTGCAAGTCAGAAACCCCCTTCACGCCCTCAGGGCTCCTCCAACGCCAGCCAATCCTCTGCGTTCAAGACCATGGAACTTACCGTGGCGCCGCCCCGGAAAAAGAGAAGCTTTCCCTATAATAAGGTGGTTCCGGAAAAGGTGGCAAAGCTTGTGCCAGAATCCGCAATCTACGCCAAGTTGCTGGGACTCGAGACTCAAATAGACTCTGCTTTGGCTAGGAAGAAAATCGATGTGCAGGAGAATGTTAGGAACCCTCGCTGTGTTAGGAAAACGCTTAGAGTTTATGTTTACAACACTTTTTCGAATCAGGTGAAAGTGGAGCCTGGGAAGAATGGTGTGGAGGAGCCTTCTTGGGCGCTTAGGATAACCGGAAGGGTGTTGGAAGATGGTAAGGATTCTGTGGCGGAAGGGATTTCGACGAAGGAATATCCAAAATTCTCGGCTTTTTTCAAGAAGATTACCATATACTTGGATCAGGGTTTGTACCAGGATAACCATGTTGTTGTGTGGGATAGTGCCCGTTCTGCGGCTGCACAGCAGCGCGATGGTTTTGAAGTGAAGAGGAAAGGAGACAAGGAATTCACTGCGGTGGTTAGGATGGCGATGAATTATTCGCCTGACAAGTTTGTGGTTTCTCCGCAACTGGCTAGAGTTTTAGGGGTTGAGTTTGACTCGCGAGCTAGGATCATAGCTGCTCTTTGGCACTATGTGAAGGCTAAGAAACTGCAGAGCCCGAATGACCCTTCGTTCTTCATGTGTGACACTTCTCTCCAGAAGGTGTTTGGGGAAGACAAGATGAAATTCTCTGTGGCTTCGCAGAAGATATCGCAGCATTTGTCACAGCCACGGCCTATACACCTGGAGCATAAAATCAAGCTTTCTGGAAATGGTCCAGCCGGAAGTACGTGTTATGATGTGCAGGTTGATGTGCCTCTTCCCCTAGAGAAGGATATGTCTGCATTCTTGGCAAGCACTGAGAGGCACAAAGATATTGATGCTTTTGATGAACTGATCTGTGATTCAATAAAGAAGATTCATGAACATCATAGGAGACGGGCATTTTTTCTCGGCTTTAGTCAGTCCCCAGCAGAGTTTATTAATGCCTTGATCGCTTCTCAGAGCAAGGATCTGAAGCTCGTTGCTGGAGATGTTAGCCAGAATACTGAAAATGAACAATGTGCTGAATTCTACAATCAACCGTGGGTTGAGGATGCTGTTGTTCGCTACCTGACCCGAAAAAATGCTCGAAGTGATGCTCCTGGAAACATCTGA 1542 0.4877 MNNTNPTKNAATPSFFTNPGTPSIPMNHLLSQTQPQPQGATSHFHGHFQLSQPQTHVLAPQQQPHPHPHPQVHNNANTNAHVAAPTPPKRASQKPPSRPQGSSNASQSSAFKTMELTVAPPRKKRSFPYNKVVPEKVAKLVPESAIYAKLLGLETQIDSALARKKIDVQENVRNPRCVRKTLRVYVYNTFSNQVKVEPGKNGVEEPSWALRITGRVLEDGKDSVAEGISTKEYPKFSAFFKKITIYLDQGLYQDNHVVVWDSARSAAAQQRDGFEVKRKGDKEFTAVVRMAMNYSPDKFVVSPQLARVLGVEFDSRARIIAALWHYVKAKKLQSPNDPSFFMCDTSLQKVFGEDKMKFSVASQKISQHLSQPRPIHLEHKIKLSGNGPAGSTCYDVQVDVPLPLEKDMSAFLASTERHKDIDAFDELICDSIKKIHEHHRRRAFFLGFSQSPAEFINALIASQSKDLKLVAGDVSQNTENEQCAEFYNQPWVEDAVVRYLTRKNARSDAPGNI 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00447 513 MobiDBLite consensus disorder prediction 95 114 - -
Gma05g00447 513 SUPERFAMILY SWIB/MDM2 domain 290 379 IPR036885 -
Gma05g00447 513 MobiDBLite consensus disorder prediction 1 115 - -
Gma05g00447 513 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 72 510 - -
Gma05g00447 513 ProSiteProfiles SWIB/MDM2 domain profile. 294 371 IPR003121 -
Gma05g00447 513 Pfam SWIB/MDM2 domain 298 369 IPR003121 -
Gma05g00447 513 SMART swib_2 295 374 IPR019835 -
Gma05g00447 513 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 72 510 - -
Gma05g00447 513 MobiDBLite consensus disorder prediction 68 82 - -
Gma05g00447 513 CDD SWIB_like 301 369 - -
Gma05g00447 513 Gene3D SWIB/MDM2 domain 291 376 IPR036885 -
Gma05g00447 513 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00447 Gma-Chr5 4264837 4267338 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma05g00447 SWIB 4.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00447 K11650 - gmx:100790947 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00447 05 4264837 4267338 Gma17g01202 17 10574668 10577293 ECH
Gma05g00447 05 4264837 4267338 Gma05g00447 05 4264837 4267338 ECH
Gma17g01202 17 10574668 10577293 Gma05g00447 05 4264837 4267338 GST
Gma05g00447 05 4264837 4267338 Gma04g01891 04 49177525 49179615 PCT
Gma05g00447 05 4264837 4267338 Gma06g01520 06 14648630 14650749 PCT
Gma04g01891 04 49177525 49179615 Gma05g00447 05 4264837 4267338 PCT
Gma06g01520 06 14648630 14650749 Gma05g00447 05 4264837 4267338 PCT