Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01891 ATGAATAATCAAGCCAAGAATATTGCTGCATCATCTTTGTTTGGTCATTCTGGAATGGCCCCACAAAAACACCACCCTAACCCCATTCAGCAGTGGAACCATCCAAACCCTTTACTCTCTCAGTCACAGTCACACCCTCAAACCCAATTCCCTGGTCCGTTTCAGTTTTCAGATCCCCAAAACCAGGTCTTTGCAAAAGCTCAGTATTCACAAGCACATTTGCATTCTCCGGCTGCCCTTGCTCATCCGCAACCTCAGACTCATCCTTTTGCCCACTTGCATAGTGTAAATACTAATACTGCTAATGGTACATCATCTCCGGCCACCGGAAGTGCCAAGCGAGCAACCCCAAAGCCCCCGTTGAGGTCCCACAATTCGTTGAATACGAACCAATCCATGCCGTTTAAGGCCACGGAATTGACCCCAGCTGCTCGGCAAAAGAAGCAAACACCAGAAAAGGTGGCTGCGCTTTTGCCCGAGTCCGCTCTTTACACTCAGTTGCTTGATTTTGAGGCTCAGGTGGATGCTGCTTTGGCCAGGAGAAAGATTGATGTACAGGAGGCTAAGCTGCCTCCCCATGTTCAGAAAACTCTTCGTGTTTATGTGTTTAATACCTTCTCAAATCATGCAAAAATGGATGCTGAGAATAGAAAGGCTGATGAATCTTGGTGGTCTCTCAAGATAACTGGAAGGATATTGGAAGATGGTATGGATTCTGTGTCTGGAACTTCACAGGGATCGAGTCCTTCATACCCGAAGTTCTCTGCATTTTTCAAGAAAATTACCATACTCTTAGATCAAAGCCTTTATCCCAATAATCATGTCATTGTATGGGATAGTGCTCGTTCCCCTACCGAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAATTTACTGCACTGATTGCAATAGAAATGAATTATACACCTGACAAGTTTATGGTTTCATCACCACTGTCTAAACTTTTAGGGATTGAGGTAGAGACTCGCTCAAGAATAATAGCTACTCTTTTTAACTACGTCAAGTCCAGGAAGCTACAGAGCCCAAATGACCCTTCATTCTTCATATGTGATCCTTCTCTACAAATGGTGTTCGGGGAAGAGAAGATGGATTTCACCATGGTTTCTCAGAAGTTATCACAGCATTTGTCACAACCACGACCTATACATCTAGAGCATAACATCAAGCTTTCTGGACATTCTCCAGCTGTATCTGCATGTTATGATATACAGGTTGATGTGCCTTTTCCACTGGAAAAGGATATGTCTACATTCTTGGCAGGTTTTGAGAGTCAGAAAGAGATTGAAGCTTATGATGAGGCAATTTGCGGCTCCTTAAAGAAAATCCAGGAGCATCGTAGAAGACGAGCTTTCTTTCTTAGCTTTAGTCAGTATCCAGCAGAGTTTATTGATACTTTGATTTCTTCTGAGAGCAAGGATTTAAAACTTGTTGCTGGAGATGCCAGCCATAATGTTGAAAAGGAGCTTCGTTCTGAATTCTTCAATCAACCATGGGTTGAGGATGCTGTCATTCGTTACCTGAACCGCAAAACTGCAGGAAGTGATGCTCATGGACGCAATTAA 1590 0.4346 MNNQAKNIAASSLFGHSGMAPQKHHPNPIQQWNHPNPLLSQSQSHPQTQFPGPFQFSDPQNQVFAKAQYSQAHLHSPAALAHPQPQTHPFAHLHSVNTNTANGTSSPATGSAKRATPKPPLRSHNSLNTNQSMPFKATELTPAARQKKQTPEKVAALLPESALYTQLLDFEAQVDAALARRKIDVQEAKLPPHVQKTLRVYVFNTFSNHAKMDAENRKADESWWSLKITGRILEDGMDSVSGTSQGSSPSYPKFSAFFKKITILLDQSLYPNNHVIVWDSARSPTEQDGFEVKRKGNKEFTALIAIEMNYTPDKFMVSSPLSKLLGIEVETRSRIIATLFNYVKSRKLQSPNDPSFFICDPSLQMVFGEEKMDFTMVSQKLSQHLSQPRPIHLEHNIKLSGHSPAVSACYDIQVDVPFPLEKDMSTFLAGFESQKEIEAYDEAICGSLKKIQEHRRRRAFFLSFSQYPAEFIDTLISSESKDLKLVAGDASHNVEKELRSEFFNQPWVEDAVIRYLNRKTAGSDAHGRN 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01891 529 MobiDBLite consensus disorder prediction 90 112 - -
Gma04g01891 529 MobiDBLite consensus disorder prediction 13 58 - -
Gma04g01891 529 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 86 527 - -
Gma04g01891 529 MobiDBLite consensus disorder prediction 79 134 - -
Gma04g01891 529 ProSiteProfiles SWIB/MDM2 domain profile. 310 387 IPR003121 -
Gma04g01891 529 SUPERFAMILY SWIB/MDM2 domain 306 395 IPR036885 -
Gma04g01891 529 MobiDBLite consensus disorder prediction 24 58 - -
Gma04g01891 529 CDD SWIB_like 317 385 - -
Gma04g01891 529 Pfam SWIB/MDM2 domain 314 385 IPR003121 -
Gma04g01891 529 SMART swib_2 311 390 IPR019835 -
Gma04g01891 529 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 86 527 - -
Gma04g01891 529 Gene3D SWIB/MDM2 domain 307 392 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01891 Gma-Chr4 49177525 49179615 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma04g01891 SWIB 5.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01891 K11650 - gmx:100784907 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01520 06 14648630 14650749 Gma04g01891 04 49177525 49179615 ECH
Gma04g01891 04 49177525 49179615 Gma04g01891 04 49177525 49179615 ECH
Gma04g01891 04 49177525 49179615 Gma06g01520 06 14648630 14650749 GST
Gma17g01202 17 10574668 10577293 Gma04g01891 04 49177525 49179615 PCT
Gma05g00447 05 4264837 4267338 Gma04g01891 04 49177525 49179615 PCT
Gma04g01891 04 49177525 49179615 Gma17g01202 17 10574668 10577293 PCT
Gma04g01891 04 49177525 49179615 Gma05g00447 05 4264837 4267338 PCT