Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01520 ATGAATAATCAAGCCAAGAATATTGCTACATCATCTTTGTTTGGTCATTCTGGAATGGCCCCACAACCACAACCACACCATCCTAACCCCATTCAGCAATGGAACCATCCAAACCCTTTACTCTCTCAGTCACAGTCACACCCTCAAACCCAATTCCATGGTCTGTTTCAGTTTTCAGAGCCCCAAAGTCAGGTCTTTGCACAAGCTCAGTATGCACAGGCTCAATTGCAGTCTCAGGCTGCACGTGCTCATCCACAAGTACCTCAAACTCAGCCTTTTGCTCACTTGCATAATGTAAAAACTAATACTGCTAATGGTGTATCAAGTCTGGGCACCGGAAGTGCTAAGCGAGCAACCCTAAAGCCCCCGTTGAGGTCTCACAATTCGTTGAATATGAACCAATCCACGCCGTTTAAGGCCACGAAGTTGACCCCAGCTGTTCTGCAAAAGAAGCAAATACCTGAAAAGGTGGCTGCGCTTTTGCCTGAGTCTGCTCTTTACACTCAGTTGCTTGATTTTGAGGCTCAGGTGGATGCTTCTTTGGCCAGGAGAAAGATTGATATACAGGAGACTAAGCTGCCTCCTCATGTTCAGAAAACTCTTCGTGTTTATGTGTTTAATACCTTCTCAAATCATGCTAAAATGGATGCTGATAATAGAAAGGCTGATGATGAATCTTGGTGGTCTCTCAAGATAATTGGAAGGATATTGGAAGATGGTGTGGATTCCATGTCAGGAATTTCACAGGGATCGAGCCCTTCGTACCCCAAGTTCTCTGCATTTTTCAAGAAAATTACCATACTCTTGGATCAAAGCCTTTATCCTGATAATCATGTCACTGTGTGGGATAGTGCTCGTTCCCCTACCCAACAGGATGGTTTTGAGGTGAAGAGGAAAGGAAACAAAGAATTTACTGCAGTGATTGCAATAGAAATGAATTATACACCTGACAAGTTTATGGTTTCACCACCACTGTCTAAACTTTTAGGGATTGAGGTAGAGACTCGCCCAAGAATAATAGCTACTCTTTCTAACTACGTGAAGTCCAGGAAGCTACAGATCCCAAATGACCCTTCATTCTTCATATGTGATCCTTCTCTACAAATGGTGTTTGGGGAAGAGAAGATGGATTTCACCATGGTTTCTCAGAAGTTAGCACAGCATTTGACACAACCACAACCTATACATATGGAGCATAACATCAAGCTTTCTGGACATTCTCCAGCTGTATCTGCATGTTATGATATACAGGTTGATGTGCCTTTTCCACTGGAAAAGGATATGTCTACATTCTTGGCAGGCTTTGAGAGTCAAAAAGAGATTGAAGCTTATGACGAGGCGATTCGCACCTCCTTAAAGAAGATCCAGGAGCATCATAGAAGACGAGCTTTCTTTCTTAGCTTTAGTCAGTCTCCAGCGGAGTTTATTGATACTTTGATTGCTTCTCAGAGCAAAGATTTAAAACTTGTTGCTGGAGATGCCAGCCATAATGTTCAAAAGGAACTTCCTTCTGAATTCTTCAATCAACCATGGGTTGAGGATGCTGTCATTCGTTACTTGAACCGCAAATCTGCAGGAAGTGATGCTCATGGACACAACTGA 1602 0.4295 MNNQAKNIATSSLFGHSGMAPQPQPHHPNPIQQWNHPNPLLSQSQSHPQTQFHGLFQFSEPQSQVFAQAQYAQAQLQSQAARAHPQVPQTQPFAHLHNVKTNTANGVSSLGTGSAKRATLKPPLRSHNSLNMNQSTPFKATKLTPAVLQKKQIPEKVAALLPESALYTQLLDFEAQVDASLARRKIDIQETKLPPHVQKTLRVYVFNTFSNHAKMDADNRKADDESWWSLKIIGRILEDGVDSMSGISQGSSPSYPKFSAFFKKITILLDQSLYPDNHVTVWDSARSPTQQDGFEVKRKGNKEFTAVIAIEMNYTPDKFMVSPPLSKLLGIEVETRPRIIATLSNYVKSRKLQIPNDPSFFICDPSLQMVFGEEKMDFTMVSQKLAQHLTQPQPIHMEHNIKLSGHSPAVSACYDIQVDVPFPLEKDMSTFLAGFESQKEIEAYDEAIRTSLKKIQEHHRRRAFFLSFSQSPAEFIDTLIASQSKDLKLVAGDASHNVQKELPSEFFNQPWVEDAVIRYLNRKSAGSDAHGHN 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01520 533 SUPERFAMILY SWIB/MDM2 domain 310 399 IPR036885 -
Gma06g01520 533 ProSiteProfiles SWIB/MDM2 domain profile. 314 391 IPR003121 -
Gma06g01520 533 SMART swib_2 315 394 IPR019835 -
Gma06g01520 533 MobiDBLite consensus disorder prediction 1 48 - -
Gma06g01520 533 MobiDBLite consensus disorder prediction 33 48 - -
Gma06g01520 533 CDD SWIB_like 321 389 - -
Gma06g01520 533 MobiDBLite consensus disorder prediction 103 134 - -
Gma06g01520 533 PANTHER CHROMATIN REMODELING COMPLEX SUBUNIT 88 531 - -
Gma06g01520 533 MobiDBLite consensus disorder prediction 1 18 - -
Gma06g01520 533 Pfam SWIB/MDM2 domain 318 389 IPR003121 -
Gma06g01520 533 Gene3D SWIB/MDM2 domain 311 397 IPR036885 -
Gma06g01520 533 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 88 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01520 Gma-Chr6 14648630 14650749 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma06g01520 SWIB 8.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01520 K11650 - gmx:100802455 1016.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01520 06 14648630 14650749 Gma04g01891 04 49177525 49179615 ECH
Gma06g01520 06 14648630 14650749 Gma06g01520 06 14648630 14650749 ECH
Gma04g01891 04 49177525 49179615 Gma06g01520 06 14648630 14650749 GST
Gma17g01202 17 10574668 10577293 Gma06g01520 06 14648630 14650749 PCT
Gma05g00447 05 4264837 4267338 Gma06g01520 06 14648630 14650749 PCT
Gma06g01520 06 14648630 14650749 Gma17g01202 17 10574668 10577293 PCT
Gma06g01520 06 14648630 14650749 Gma05g00447 05 4264837 4267338 PCT