Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00928 ATGGGTACTTTAGAACGCTTTTCAACTGAAGAAGATGAAAGACCTAGAAAGTTTTCGAAACTTTCAGATGATCCTGAGGAGGAGGATGCTATGCAGATTGATATGGGTTCTCTTTTAGCTTCCCAAGACCAAGGCAATGATCATCCGAAGCATGCACCCAAGAAGACGGGAAAGGTGGTGCGTGACCCAAAATGGCTTGTTAACGAGGATGTCTCAACCGGTGTTCTCCTTCACCTGTCAAGGTATGAGTATGGCTCAATTGCCTCACTGAACAGGAATTTCTTGTCTCTGATTAGATCAGGAGAACTCTACCGGGTCAGGCGGAAATTGGGAGTTGTAGAACACTGGGTTTACTTCTCTTGCAACATCCTTGAATGGGAGGTGTTTGATCCAATCAATGGCCATTGGATGCACTTGCCTAGAATGCCTTGCAATCCGTATGACTGCTTCGTGTTTTCTGATAAGGAGTCTTTGGCTGTTGGCACAGAACTTCTTGTGTTTGGAAGGGCAATAGAGGCTTGTATTGTTTATGAATATAGCCTCTTGACCAACAAATGGTCACATGGTATTCAGATGAGTGTTCCTAGATGCTTGTTTGCATCCGCGAGCCACGGTGAAAAGGCCATAGTTGCTGGTGGGAGTGCAGAGGGCAAGATCTTGAGTGTGGCTGAGCTTTATAACTCAGACACCAAGACATGGGAGGTTCTTCCAAACATGAACAAGGCAAGAAAAATGTGTTCTGGCGTGTTCATGGATGGGAAATTTTATGCCATCGGTGGAATGGGGGAAGATGGTAATAGGCTGACATGTGGTGAGGAGTATGATTTGGATACAAAAGAATGGCGTGTGATTCCTAACATGGTGCCTCCGCGAATCCAGGGACCAGATGGCCCTGAGGCACCTCCTTTGGTTGCGGTTGTGAACAATGTGCTGTATGCTGCAGATTATGCACAGATGGTGATGAGGAAGTATGTGAAAGAGAGGAACAATTGGGTCTACGTTGGAGGTCTTCCTGAGGGAGCATCCTCTGTGAATGGTTGGGGATATGCATTTCGTGCATGTGGAGATCGAATTGTTGTTATTGGTGGGGAAAGGACTATGGGTGGTGAAAGTATGGTTGAAATCAATTCTTGGATCCCTGCTCAAGGTGCACCACAGTGGAACTTGCTTGCCAGAAGGTGCATTGGTGGGAACTTTGTGTATAATTGCGCAGTCATGGGATGCTGA 1227 0.4637 MGTLERFSTEEDERPRKFSKLSDDPEEEDAMQIDMGSLLASQDQGNDHPKHAPKKTGKVVRDPKWLVNEDVSTGVLLHLSRYEYGSIASLNRNFLSLIRSGELYRVRRKLGVVEHWVYFSCNILEWEVFDPINGHWMHLPRMPCNPYDCFVFSDKESLAVGTELLVFGRAIEACIVYEYSLLTNKWSHGIQMSVPRCLFASASHGEKAIVAGGSAEGKILSVAELYNSDTKTWEVLPNMNKARKMCSGVFMDGKFYAIGGMGEDGNRLTCGEEYDLDTKEWRVIPNMVPPRIQGPDGPEAPPLVAVVNNVLYAADYAQMVMRKYVKERNNWVYVGGLPEGASSVNGWGYAFRACGDRIVVIGGERTMGGESMVEINSWIPAQGAPQWNLLARRCIGGNFVYNCAVMGC 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00928 408 Pfam Kelch motif 242 287 IPR006652 GO:0005515
Gma17g00928 408 Pfam Kelch motif 195 240 IPR006652 GO:0005515
Gma17g00928 408 SMART kelc_smart 163 206 IPR006652 GO:0005515
Gma17g00928 408 SMART kelc_smart 254 309 IPR006652 GO:0005515
Gma17g00928 408 SMART kelc_smart 207 253 IPR006652 GO:0005515
Gma17g00928 408 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 14 408 - -
Gma17g00928 408 MobiDBLite consensus disorder prediction 1 58 - -
Gma17g00928 408 MobiDBLite consensus disorder prediction 1 26 - -
Gma17g00928 408 SUPERFAMILY Kelch motif 123 374 IPR015915 GO:0005515
Gma17g00928 408 Gene3D - 105 391 IPR015915 GO:0005515
Gma17g00928 408 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 14 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00928 Gma-Chr17 7929213 7930439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00928 70 246 EF-hand Containing Proteins AT4G39560 27.320 4.30e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00928 - - gmx:100807488 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00274 05 2471333 2472556 Gma17g00928 17 7929213 7930439 ECH
Gma17g00928 17 7929213 7930439 Gma17g00928 17 7929213 7930439 ECH
Gma17g00928 17 7929213 7930439 Gma05g00274 05 2471333 2472556 GST
Gma01g00413 01 5138691 5141702 Gma17g00928 17 7929213 7930439 PCT
Gma02g00965 02 10250074 10254052 Gma17g00928 17 7929213 7930439 PCT