Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g00413 ATGTTGGACGGTCGTTCCTGCGTTGTTCCGAGGATGTTTTCCGGCACTTGCCAGGCAGAGAACGATTGGTCTTACATGAAGTGCTTGCTGGAGTTGGACATCAAGAATGGCAAGCGCCCTATGGAGATTGATGATGTTGAGGAGGATGAGCCCCACCAGCCAAGGAAGTGTACTAAGAAGTTGGATTCTTGCCATAGAGTTGAAATGGCTCGAATTTCGTTTCAACGTCAATCTATTGAGGCCAAGGATTCTGTTGTTCCCCCTATGGATCAGGAGACCATTGAGCCACTGAGTGTTTGTCAAGGAGTTGTTGAAGAAGATGGAGCTTTGACCGACCAGCTATTGGATGAGAAAGAACAGGAGGTTGATGGTTATTTGATGGATTTTGGTGACCATCAATCTGATAAACAGCAGCAGGCTCAGACGGGGGATTCATCAGATTTCGGTGCTCAGCTATCTGATGAAGATCAATTGCAGCATGATGATGAGAATTTATTGAATTCGAGTGAGCAGCAATCCGAGGGGCAGCAGCAGCACCATGGTGGGGATTCTTCGGATTCCAGTTCTCTCTTGCCACGCATGAACCGGGACAGTTCAATCGCCTGTCTCAGCCGCTGTTCAAGGTCAGATTATGGTTCTCTCGCCTCGCTGAATAGGAGCTTCTGGAACATAATCCGAAGCGGTGAGCTCTATCAGTGGAGGAGACTGAATGGTATCATGGAACACTGGATTTATTTTTCCTGCGCCCTCCTCGAATGGGAGGCCTATGATCCGATTCGCCAGCGGTGGATGCATTTGCCAAGGATGGCTTCTAATGAATGCTTCATGTGTTCAGATAAGGAATCTTTAGCTGTAGGTACTGAGCTGCTTGTGTTTGGGAGGGAGCTGAGATCCCATGTCACTTACAGATACAGTCTCTTGACAAACTCGTGGACGTCCGGAACAAGGATGAATGCTCCAAGATGCTTGTTTGGCTCAGCAAGCCTTGGTGAGATTGCAATATTAGCTGGTGGGTGTGATTCAGAGGGACACATCCTTGACTCTGCTGAATTATATAATTCTGAGACTCAAACATGGGAAACACTCCCATGTATGAAAAAACCCAGGAAGATGTGCTCTGGGGTATTTATGGATGGAAAGTTTTATGTTATAGGGGGGATTGGGGGGTGTGATTCTAAGCTCCTCACATGTGGAGAGGAGTACAATTTACAGACTAGGACATGGACCGAGATTCCGAGCATGTCCCCTGGACGGAGTAGTAGGGGTCCTGAGATGCCTGCAACAGCTGAGGCACCACCTCTGGTTGCTGTTGTAAATGATGAATTGTATGCTGCTGATTATGCCGACATGGAGGTTAAGAAGTATGACAAGGAGAGAAAAGTGTGGTTAACCATTGGGAGACTGCCGGAACGAGCAGTGTCAATGAATGGCTGGGGTCTTGCATTCAGGGCATGTGGAGATAAGCTTATTGTCATTGGTGGACCTAGGACTCATGGCGAGGGCTTTATTGAACTCAATTCATGGGTGCCTAGTGAAGGACCTCCACGGTGGGATCTACTTGCTAGAAAACGTTCCGGCAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGA 1614 0.4777 MLDGRSCVVPRMFSGTCQAENDWSYMKCLLELDIKNGKRPMEIDDVEEDEPHQPRKCTKKLDSCHRVEMARISFQRQSIEAKDSVVPPMDQETIEPLSVCQGVVEEDGALTDQLLDEKEQEVDGYLMDFGDHQSDKQQQAQTGDSSDFGAQLSDEDQLQHDDENLLNSSEQQSEGQQQHHGGDSSDSSSLLPRMNRDSSIACLSRCSRSDYGSLASLNRSFWNIIRSGELYQWRRLNGIMEHWIYFSCALLEWEAYDPIRQRWMHLPRMASNECFMCSDKESLAVGTELLVFGRELRSHVTYRYSLLTNSWTSGTRMNAPRCLFGSASLGEIAILAGGCDSEGHILDSAELYNSETQTWETLPCMKKPRKMCSGVFMDGKFYVIGGIGGCDSKLLTCGEEYNLQTRTWTEIPSMSPGRSSRGPEMPATAEAPPLVAVVNDELYAADYADMEVKKYDKERKVWLTIGRLPERAVSMNGWGLAFRACGDKLIVIGGPRTHGEGFIELNSWVPSEGPPRWDLLARKRSGNFVYNCAVMGC 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g00413 537 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 537 - -
Gma01g00413 537 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 1 537 - -
Gma01g00413 537 SUPERFAMILY Kelch motif 250 533 IPR015915 GO:0005515
Gma01g00413 537 SMART kelc_smart 380 440 IPR006652 GO:0005515
Gma01g00413 537 SMART kelc_smart 288 331 IPR006652 GO:0005515
Gma01g00413 537 SMART kelc_smart 332 379 IPR006652 GO:0005515
Gma01g00413 537 Pfam Kelch motif 320 365 IPR006652 GO:0005515
Gma01g00413 537 Pfam Kelch motif 368 415 IPR006652 GO:0005515
Gma01g00413 537 MobiDBLite consensus disorder prediction 166 191 - -
Gma01g00413 537 Gene3D - 237 516 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g00413 Gma-Chr1 5138691 5141702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma01g00413 197 362 EF-hand Containing Proteins AT4G39560 26.519 8.06e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g00413 - - gmx:100818865 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g00413 01 5138691 5141702 Gma01g00413 01 5138691 5141702 ECH
Gma01g00413 01 5138691 5141702 Gma02g00965 02 10250074 10254052 GST
Gma01g00413 01 5138691 5141702 Gma17g00928 17 7929213 7930439 PCT
Gma01g00413 01 5138691 5141702 Gma05g00274 05 2471333 2472556 PCT