Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00875 ATGGAACACAGCACATCCTTCAACGACTCAAATAACAGCCTCTCTTCACAACGAAGCCTCGTTTCAGTTCCTTCCCTCAACTCACACTCTCAATTCCTCACTCCTTCCACCACCTCCCACACGTGCCTCACCACTCTCAAATTCCTCACCTCATCCTCCGTATACATCTCCTCCCTCACCCTTGCCGGCAAGTTCCTCTACGCAGGCTCCTCCGACAGAGAAATCAGATCCTGGAACCACACCCATTTCATCCAAAACCAAAAACCAaccaccaccaccaccaccaccaccaccaACAACAACAACAACAGCGTTGTAATTGCCGGAAAAGGTGCTGTCAAGTCCATAGTAGTTCACTCCGACAAACTCTTCACCGCCCACCAAGACAACAAAATCCGCGTCTGGAAAGTCACAAACCTTTCCCACGACCACCAGAAGTACACACGTGTGGCCACACTCCCCACGCTCGCCGACCGCGTCACCAAACTCCTCGTCCCCAAAAACCACGTGCGGATTCGCCGCCACAAAAAGTGCACCTGGGTTCACCACGTCGACACCGTCTCCTCCATCGCCCTGTCCCAAGACGGAAACTTCTTGTACTCGGTCTCATGGGACAGAACAATTAAGGTTTGGCGAACCAAAGACTTGGCGTGCTTGGAGTCCGTGCGCAACGCGCACGACGACGCCATCAACGCGGTTGCAGTCTCCTACGATGGGCACGTCTACACAGGATCCGCGGACAAGAGAATCAGGGTTTGGAAAAAACTCGAAGGCGAGAAGAAACTTTCATTAGTGGATACTTTGGAGAAACATAATTCTGGGATTAACGCGTTGGCGCTTAAAAGTGATGGCTCTGTGTTGTATTCTGGTGCATGCGATAGGTCAATATTGGTTTCGGAGAAGGGAGAGAATGGTAAATTGTTAGTGGTTGGAGCTCTTAGGGGGCATGCTAAGTCGATTTTGTGCTTGGCGGTGGTTTCGGATTTGGTGTGTAGTGGTTCGGAGGACAAAACGGTGCGTATTTGGAGAGGGGTTCAGAAGGATGAGTATTCGTGTTTAGCTGTTTTAGAAGGGCATAGGAGTCCGATTAAGAGCATAACTGCAGCGCTTGATCTTAGTCAAGACCCTTCTTCCCAAGCCACGTCTTTTCTTCTCTACAGTGCCAGTTTGGACTCTCATGTTAAGCTTTGGCAGCTTTTTCTTCCTCTTCTTTCAACTTAA 1221 0.4873 MEHSTSFNDSNNSLSSQRSLVSVPSLNSHSQFLTPSTTSHTCLTTLKFLTSSSVYISSLTLAGKFLYAGSSDREIRSWNHTHFIQNQKPTTTTTTTTTNNNNNSVVIAGKGAVKSIVVHSDKLFTAHQDNKIRVWKVTNLSHDHQKYTRVATLPTLADRVTKLLVPKNHVRIRRHKKCTWVHHVDTVSSIALSQDGNFLYSVSWDRTIKVWRTKDLACLESVRNAHDDAINAVAVSYDGHVYTGSADKRIRVWKKLEGEKKLSLVDTLEKHNSGINALALKSDGSVLYSGACDRSILVSEKGENGKLLVVGALRGHAKSILCLAVVSDLVCSGSEDKTVRIWRGVQKDEYSCLAVLEGHRSPIKSITAALDLSQDPSSQATSFLLYSASLDSHVKLWQLFLPLLST 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00875 406 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 406 - -
Gma17g00875 406 Gene3D - 14 168 IPR015943 GO:0005515
Gma17g00875 406 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Gma17g00875 406 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Gma17g00875 406 PRINTS G protein beta WD-40 repeat signature 385 399 IPR020472 -
Gma17g00875 406 Gene3D - 169 258 IPR015943 GO:0005515
Gma17g00875 406 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 406 IPR045182 -
Gma17g00875 406 Pfam WD domain, G-beta repeat 220 254 IPR001680 GO:0005515
Gma17g00875 406 Pfam WD domain, G-beta repeat 181 211 IPR001680 GO:0005515
Gma17g00875 406 Pfam WD domain, G-beta repeat 311 342 IPR001680 GO:0005515
Gma17g00875 406 Pfam WD domain, G-beta repeat 351 397 IPR001680 GO:0005515
Gma17g00875 406 Pfam WD domain, G-beta repeat 264 297 IPR001680 GO:0005515
Gma17g00875 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 342 IPR001680 GO:0005515
Gma17g00875 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 254 - -
Gma17g00875 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 221 IPR001680 GO:0005515
Gma17g00875 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 342 - -
Gma17g00875 406 Gene3D - 259 402 IPR015943 GO:0005515
Gma17g00875 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 254 IPR001680 GO:0005515
Gma17g00875 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 211 - -
Gma17g00875 406 SUPERFAMILY WD40 repeat-like 51 399 IPR036322 GO:0005515
Gma17g00875 406 SMART WD40_4 349 398 IPR001680 GO:0005515
Gma17g00875 406 SMART WD40_4 261 300 IPR001680 GO:0005515
Gma17g00875 406 SMART WD40_4 39 79 IPR001680 GO:0005515
Gma17g00875 406 SMART WD40_4 306 343 IPR001680 GO:0005515
Gma17g00875 406 SMART WD40_4 99 136 IPR001680 GO:0005515
Gma17g00875 406 SMART WD40_4 173 212 IPR001680 GO:0005515
Gma17g00875 406 SMART WD40_4 215 254 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00875 Gma-Chr17 7443993 7445313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00875 225 398 Acyl Lipid Metabolism Gene Families AT3G18860 28.022 9.21e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00875 - - gmx:100794737 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00323 05 2979393 2980684 Gma17g00875 17 7443993 7445313 ECH
Gma17g00875 17 7443993 7445313 Gma17g00875 17 7443993 7445313 ECH
Gma17g00875 17 7443993 7445313 Gma05g00323 05 2979393 2980684 GST
Gma17g00875 17 7443993 7445313 Gma04g01731 04 46680216 46681469 PCT
Gma17g00875 17 7443993 7445313 Gma06g01663 06 16541741 16543025 PCT
Gma04g01731 04 46680216 46681469 Gma17g00875 17 7443993 7445313 PCT
Gma06g01663 06 16541741 16543025 Gma17g00875 17 7443993 7445313 PCT