Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00323 ATGGAACACAGCGCATCCTTCAACAATAACAGCCTCTCTTCACAACGCAGCCTCGCTTCAGTCCCTTCCCTCAACTCACACTCTCACCTCTTCATTCCTTCCACTACCTCTCACTCGTGCCTCACCACTCTCAAACCCCACACTTCCTCCTCCGTATACATCTCCTGCCTTACCCTCGCCGGCAACTTGCTCTACACTGGCTCCTCCGACAGAGAAATCAGATCCTGGAACCACACTCATTTCATCCAAAAACCAACCACCACCAACAACAACGTTGTAATTGCAGGAAAAGGTGCTGTGAAGTCCATAGTGGTCCACTCCGACAAACTCTTCACCGCCCACCAAGACAACAAAATCCGCGTCTGGAGAGTCACAAACCTCGAACACGACCAGAACCAGAAGTACACACGTGTGGCCACACTCCCCACGCTCGGCGACCGCTTGACCAAACTCCTGCTCCCGAAAAACCAGGTGCGCATTCGCCGCCACAAGAAGTGCACCTGGGTTCACCATGTGGACACCGTCTCCTCCCTCGCACTGTCCAAAGACGGAACCTTTTTGTACTCCGTTTCATGGGACAGAACAATTAAGGTTTGGCGAACCAAAGACTTCGCGTGCTTGGAGTCCGTGCGCGACGCGCACGACGACGCCATCAACGCGGTCGCAGTCTCCTACGATGGGTACGTCTACACCGGATCCGCGGACAAGAGAATTAGGGTTTGGAAAAAACTCGAAGGGGAGAAGAAACATTCACTAGTGGACACGTTGGAGAAACACAACTCTGGGATTAACGCGTTGGCGCTTAGCGCCGATGGCTCTGTGTTGTATTCTGGTGCATGCGATAGGTCAATATTGGTTTCGGAGAAGGGTAAAAATGGTAAATTGTTAGTGGTTGGTGCTTTGAGGGGGCATACTAGGTCGATTTTGTGTTTGGCTGTGGTTTCGGATTTGGTGTGTAGTGGTTCGGAGGACAAAACGGTGCGTATTTGGAGAGGGGTTCAGAAGGAGTATTCGTGTTTAGCTGTTTTGGAAGGGCATAGGAGTCCGATTAAGAGCTTAACTGCTGCGGTTGATCGTAGTGAACAAGACCCTAATTCAGAAGAACCGTCTTTTCTTGTCTATAGTGCCAGTTTGGACTGTGATGTTAAGGTTTGGCAAGTTTTTGTTCCTCTTCTTTCAACTTAA 1185 0.5038 MEHSASFNNNSLSSQRSLASVPSLNSHSHLFIPSTTSHSCLTTLKPHTSSSVYISCLTLAGNLLYTGSSDREIRSWNHTHFIQKPTTTNNNVVIAGKGAVKSIVVHSDKLFTAHQDNKIRVWRVTNLEHDQNQKYTRVATLPTLGDRLTKLLLPKNQVRIRRHKKCTWVHHVDTVSSLALSKDGTFLYSVSWDRTIKVWRTKDFACLESVRDAHDDAINAVAVSYDGYVYTGSADKRIRVWKKLEGEKKHSLVDTLEKHNSGINALALSADGSVLYSGACDRSILVSEKGKNGKLLVVGALRGHTRSILCLAVVSDLVCSGSEDKTVRIWRGVQKEYSCLAVLEGHRSPIKSLTAAVDRSEQDPNSEEPSFLVYSASLDCDVKVWQVFVPLLST 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00323 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 251 IPR001680 GO:0005515
Gma05g00323 394 SMART WD40_4 203 242 IPR001680 GO:0005515
Gma05g00323 394 SMART WD40_4 336 386 IPR001680 GO:0005515
Gma05g00323 394 SMART WD40_4 294 331 IPR001680 GO:0005515
Gma05g00323 394 SMART WD40_4 37 77 IPR001680 GO:0005515
Gma05g00323 394 SMART WD40_4 86 123 IPR001680 GO:0005515
Gma05g00323 394 SMART WD40_4 249 288 IPR001680 GO:0005515
Gma05g00323 394 SMART WD40_4 161 200 IPR001680 GO:0005515
Gma05g00323 394 Pfam WD domain, G-beta repeat 207 242 IPR001680 GO:0005515
Gma05g00323 394 Pfam WD domain, G-beta repeat 169 199 IPR001680 GO:0005515
Gma05g00323 394 Pfam WD domain, G-beta repeat 39 77 IPR001680 GO:0005515
Gma05g00323 394 Pfam WD domain, G-beta repeat 253 285 IPR001680 GO:0005515
Gma05g00323 394 Pfam WD domain, G-beta repeat 338 385 IPR001680 GO:0005515
Gma05g00323 394 Pfam WD domain, G-beta repeat 299 330 IPR001680 GO:0005515
Gma05g00323 394 CDD WD40 40 386 - -
Gma05g00323 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 242 - -
Gma05g00323 394 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 394 IPR045182 -
Gma05g00323 394 Gene3D - 149 247 IPR015943 GO:0005515
Gma05g00323 394 Gene3D - 248 390 IPR015943 GO:0005515
Gma05g00323 394 Gene3D - 4 148 IPR015943 GO:0005515
Gma05g00323 394 PANTHER MYOSIN HEAVY CHAIN KINASE B-LIKE PROTEIN 1 394 - -
Gma05g00323 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 199 - -
Gma05g00323 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 209 IPR001680 GO:0005515
Gma05g00323 394 SUPERFAMILY WD40 repeat-like 34 387 IPR036322 GO:0005515
Gma05g00323 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 330 - -
Gma05g00323 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 330 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00323 Gma-Chr5 2979393 2980684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00323 213 386 Acyl Lipid Metabolism Gene Families AT3G18860 26.374 1.56e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00323 - - gmx:100801906 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00323 05 2979393 2980684 Gma17g00875 17 7443993 7445313 ECH
Gma05g00323 05 2979393 2980684 Gma05g00323 05 2979393 2980684 ECH
Gma17g00875 17 7443993 7445313 Gma05g00323 05 2979393 2980684 GST
Gma05g00323 05 2979393 2980684 Gma04g01731 04 46680216 46681469 PCT
Gma05g00323 05 2979393 2980684 Gma06g01663 06 16541741 16543025 PCT
Gma04g01731 04 46680216 46681469 Gma05g00323 05 2979393 2980684 PCT
Gma06g01663 06 16541741 16543025 Gma05g00323 05 2979393 2980684 PCT