Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01731 ATGGAATACCAATACCCATCATCTTATAGCGTCTCTTCCTCTTCTCACTCCAACCACCATCAGCAAGGCTCAACAACGAAATCCCTCTCTTCATCACAACGCAGCCTTATCTCAGTCCCCTCCCTCAACCACCACCACCTCCACACCCCAAATCCCTCCGTCTACCACCACTGCCTCACAACCCTCAAGGGCCACACCTCCTACATCTCCTCCTTAACCCTCTCCGGCAAATTCCTCTACACCGGCTCCTCCGACCGCGAAATCCGGTCCTGGAACCGCATCCCTGAAAACTCATCAACCGACAACAGTAATAATAATAACAATAACAGCACCGTACTCGCCGGTAAGGGTGCTGTTAAGTCGTTAGTAATCCAATCCAACAAACTCTTCAGCGCGCACCAAGACAACAAAATCCGCGTCTGGAAAATAAGCAACAACGACGACCACCACCACCAGAAATACACACACGTGGCCACGCTCCCCACCCTCGGCGATCGCGCCTCTAAAATCTTGATCCCCAAGAACAAGGTCCAAATCCGAAGGCACAAGAAATGCACGTGGGTTCACCACGTTGACACCGTCTCTGCCCTCGCCCTGTCCAAAGACGGAGCCTTGCTATACTCCGTCTCTTGGGACAGAACACTCAAAATCTGGAAAACCAAAGACTTCACGTGCCTGGAGTCCCTCGCCAACGCGCACGACGACGCCATCAACGCGGTCGCAGTCTCCTACGATGGGTGCGTCTACACGGGATCAGCGGACAAAAGGATCAAGGTGTGGAAGAAATTCGCTGGAGAAAAGAAACACACCTTAATAGAGACCTTGGAGAAGCACAACTCTGGGGTGAATGCGTTGGCTCTAAGCAGCGACGAGAATGTTCTATATTCTGGTGCATGCGATAGGGCTATTTTGGTTTGGGAGAAAGAGGGTGATGATGGGAAAATGGGGGTGGTGGGTGCGTTAAGGGGGCACACTATGTCCATTTTGTGTTTATCTGTTGCTGCGGATTTGGTGTGTAGTGGCTCTGCGGATAAAACGATTAGAGTTTGGAGAGGTTCTGTTGATGCGCATGAATATTCTTGTTTAGCTGTTTTGGAAGGGCACAGGGGTTCAATCAAGTGCATAAGCGCAGTGGTTGACCACTGCAACAACACCAACACATGGTCGCAGTCGGAAGCATTATCTTTTCTAGTCTATAGTGGCGGTTTGGACTGCCACATTAAGGTCTGGCAGATTTTAGTTCCTGCTATCTAA 1254 0.5048 MEYQYPSSYSVSSSSHSNHHQQGSTTKSLSSSQRSLISVPSLNHHHLHTPNPSVYHHCLTTLKGHTSYISSLTLSGKFLYTGSSDREIRSWNRIPENSSTDNSNNNNNNSTVLAGKGAVKSLVIQSNKLFSAHQDNKIRVWKISNNDDHHHQKYTHVATLPTLGDRASKILIPKNKVQIRRHKKCTWVHHVDTVSALALSKDGALLYSVSWDRTLKIWKTKDFTCLESLANAHDDAINAVAVSYDGCVYTGSADKRIKVWKKFAGEKKHTLIETLEKHNSGVNALALSSDENVLYSGACDRAILVWEKEGDDGKMGVVGALRGHTMSILCLSVAADLVCSGSADKTIRVWRGSVDAHEYSCLAVLEGHRGSIKCISAVVDHCNNTNTWSQSEALSFLVYSGGLDCHIKVWQILVPAI 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01731 417 MobiDBLite consensus disorder prediction 1 35 - -
Gma04g01731 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 350 - -
Gma04g01731 417 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 415 IPR045182 -
Gma04g01731 417 Gene3D - 265 414 IPR015943 GO:0005515
Gma04g01731 417 Gene3D - 178 264 IPR015943 GO:0005515
Gma04g01731 417 SMART WD40_4 314 351 IPR001680 GO:0005515
Gma04g01731 417 SMART WD40_4 106 142 IPR001680 GO:0005515
Gma04g01731 417 SMART WD40_4 180 219 IPR001680 GO:0005515
Gma04g01731 417 SMART WD40_4 358 411 IPR001680 GO:0005515
Gma04g01731 417 SMART WD40_4 55 92 IPR001680 GO:0005515
Gma04g01731 417 SMART WD40_4 268 307 IPR001680 GO:0005515
Gma04g01731 417 SMART WD40_4 222 261 IPR001680 GO:0005515
Gma04g01731 417 Gene3D - 9 177 IPR015943 GO:0005515
Gma04g01731 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 219 - -
Gma04g01731 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 92 - -
Gma04g01731 417 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 12 415 - -
Gma04g01731 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 270 IPR001680 GO:0005515
Gma04g01731 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Gma04g01731 417 CDD WD40 58 411 - -
Gma04g01731 417 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 307 - -
Gma04g01731 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 350 IPR001680 GO:0005515
Gma04g01731 417 SUPERFAMILY WD40 repeat-like 57 412 IPR036322 GO:0005515
Gma04g01731 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 307 IPR001680 GO:0005515
Gma04g01731 417 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 92 IPR001680 GO:0005515
Gma04g01731 417 Pfam WD domain, G-beta repeat 225 261 IPR001680 GO:0005515
Gma04g01731 417 Pfam WD domain, G-beta repeat 319 350 IPR001680 GO:0005515
Gma04g01731 417 Pfam WD domain, G-beta repeat 360 410 IPR001680 GO:0005515
Gma04g01731 417 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Gma04g01731 417 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Gma04g01731 417 Pfam WD domain, G-beta repeat 273 306 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01731 Gma-Chr4 46680216 46681469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01731 232 372 Acyl Lipid Metabolism Gene Families AT3G18860 28.947 2.17e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01731 - - gmx:100777242 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01663 06 16541741 16543025 Gma04g01731 04 46680216 46681469 ECH
Gma04g01731 04 46680216 46681469 Gma04g01731 04 46680216 46681469 ECH
Gma04g01731 04 46680216 46681469 Gma06g01663 06 16541741 16543025 GST
Gma17g00875 17 7443993 7445313 Gma04g01731 04 46680216 46681469 PCT
Gma05g00323 05 2979393 2980684 Gma04g01731 04 46680216 46681469 PCT
Gma04g01731 04 46680216 46681469 Gma17g00875 17 7443993 7445313 PCT
Gma04g01731 04 46680216 46681469 Gma05g00323 05 2979393 2980684 PCT