Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00864 ATGGCTGCAACAGCTTCAAGGTTCATCAAGTGTGTGACAGTCGGGGATGGAGCTGTAGGCAAAACTTGCATGCTCATTTGCTATACAAGCAACAAATTCCCCACGGACTATATTCCAACGGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAAACACAACTGTCAATTTAGGCCTCTGGGACACTGCTGGGCAAGAGGATTACAACAGGCTGAGGCCATTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTCTCTTTAGTTAGCCATGCAAGCTACGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCTGGTGTCCCAGTGGTGCTAGTTGGCACCAAATTGGATCTTCGAGAAGACAAGCACTATTTGGCTGATCATCCTGGTCTGGCGCCTGTGACTTCTGAGCAAGGTGAGGAATTGCGTAAACTGGTCGGAGCTACGTATTATATAGAGTGCAGCTCAAAGACTCAGCAGAATGTGAAGTCAGTTTTTGATGCTGCTATCAAGGTGGTCATCGAGCCTCCACAAAAACATGAGAAGAAGAAAAAACCACGTCGAGGGTGTCTACTAAATGTCATCTGTGGAAGGAATATAGTTCGTTTCAAATGA 633 0.4566 MAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVENTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWVPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLAPVTSEQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIEPPQKHEKKKKPRRGCLLNVICGRNIVRFK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00864 210 PANTHER RHO FAMILY GTPASE 1 201 IPR003578 GO:0005525|GO:0007264
Gma17g00864 210 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Gma17g00864 210 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC10-RELATED 1 201 - -
Gma17g00864 210 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Gma17g00864 210 ProSiteProfiles small GTPase Rab1 family profile. 4 210 - -
Gma17g00864 210 ProSiteProfiles small GTPase Ras family profile. 4 198 IPR001806 GO:0003924|GO:0005525
Gma17g00864 210 SMART ras_sub_4 6 182 - -
Gma17g00864 210 CDD Rop_like 8 180 - -
Gma17g00864 210 Gene3D - 2 199 IPR027417 -
Gma17g00864 210 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Gma17g00864 210 TIGRFAM small_GTP: small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Gma17g00864 210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Gma17g00864 210 SMART rab_sub_5 9 182 - -
Gma17g00864 210 PRINTS Transforming protein P21 ras signature 9 30 - -
Gma17g00864 210 PRINTS Transforming protein P21 ras signature 32 48 - -
Gma17g00864 210 PRINTS Transforming protein P21 ras signature 49 71 - -
Gma17g00864 210 PRINTS Transforming protein P21 ras signature 111 124 - -
Gma17g00864 210 PRINTS Transforming protein P21 ras signature 157 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00864 Gma-Chr17 7323117 7326587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00864 9 182 EF-hand Containing Proteins AT5G27540 24.138 3.45e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00864 K04392 - gmx:100806681 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00864 17 7323117 7326587 Gma17g00864 17 7323117 7326587 ECH
Gma17g00864 17 7323117 7326587 Gma05g00334 05 3116889 3120864 GST
Gma17g00864 17 7323117 7326587 Gma04g01745 04 46903734 46907672 PCT
Gma17g00864 17 7323117 7326587 Gma06g01650 06 16366212 16370638 PCT
Gma04g01745 04 46903734 46907672 Gma17g00864 17 7323117 7326587 PCT
Gma06g01650 06 16366212 16370638 Gma17g00864 17 7323117 7326587 PCT