Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00334 ATGGCTGCAACAGCTTCAAGGTTTATCAAGTGTGTGACAGTTGGGGATGGAGCTGTAGGCAAAACTTGCATGCTCATTTGCTATACTAGCAACAAATTCCCCACGGACTATATTCCAACGGTGTTTGATAATTTCAGTGCAAATGTAGTTGTGGAAGGCACAACTGTCAATTTAGGCCTCTGGGACACTGCTGGACAAGAGGATTACAACAGACTGAGGCCTTTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTCTCTTTAGTCAGTCATGCAAGCTATGAAAATGTGTTGAAGAAGTGGGTTCCTGAACTGCAGCATTTTGCTCCCGGCATTCCAGTGGTGCTAGTTGGCACCAAATTGGATCTCCGAGAAGACAAGCACTATTTGGCTGATCATCCTGGTCTGGTGCCTGTGACTTCTGAGCAAGGTGAGGAATTGCGTAAACTGGTGGGAGCTACATATTATATAGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGTCAGTTTTTGATGCTGCTATAAAGGTGGTCATTAAGCCTCCACAAAAACAAGAGAAGAAAAAACCACGTCGAGGGTGTCTACTAAATGTCATCTGTGGAAGGAATATAGTTCGTTTTAAATGA 630 0.4429 MAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSHASYENVLKKWVPELQHFAPGIPVVLVGTKLDLREDKHYLADHPGLVPVTSEQGEELRKLVGATYYIECSSKTQQNVKSVFDAAIKVVIKPPQKQEKKKPRRGCLLNVICGRNIVRFK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00334 209 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Gma05g00334 209 SMART rab_sub_5 9 182 - -
Gma05g00334 209 PRINTS Transforming protein P21 ras signature 9 30 - -
Gma05g00334 209 PRINTS Transforming protein P21 ras signature 32 48 - -
Gma05g00334 209 PRINTS Transforming protein P21 ras signature 49 71 - -
Gma05g00334 209 PRINTS Transforming protein P21 ras signature 111 124 - -
Gma05g00334 209 PRINTS Transforming protein P21 ras signature 157 179 - -
Gma05g00334 209 ProSiteProfiles small GTPase Rab1 family profile. 4 209 - -
Gma05g00334 209 TIGRFAM small_GTP: small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Gma05g00334 209 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Gma05g00334 209 SMART ras_sub_4 6 182 - -
Gma05g00334 209 CDD Rop_like 8 180 - -
Gma05g00334 209 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Gma05g00334 209 PANTHER RHO FAMILY GTPASE 1 202 IPR003578 GO:0005525|GO:0007264
Gma05g00334 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Gma05g00334 209 ProSiteProfiles small GTPase Ras family profile. 4 197 IPR001806 GO:0003924|GO:0005525
Gma05g00334 209 Gene3D - 2 198 IPR027417 -
Gma05g00334 209 PANTHER GTPASE, PUTATIVE-RELATED 1 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00334 Gma-Chr5 3116889 3120864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00334 9 192 EF-hand Containing Proteins AT5G27540 24.339 2.61e-15 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00334 K04392 - gmx:100806681 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00334 05 3116889 3120864 Gma05g00334 05 3116889 3120864 ECH
Gma17g00864 17 7323117 7326587 Gma05g00334 05 3116889 3120864 GST
Gma05g00334 05 3116889 3120864 Gma04g01745 04 46903734 46907672 PCT
Gma05g00334 05 3116889 3120864 Gma06g01650 06 16366212 16370638 PCT
Gma04g01745 04 46903734 46907672 Gma05g00334 05 3116889 3120864 PCT
Gma06g01650 06 16366212 16370638 Gma05g00334 05 3116889 3120864 PCT