Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01650 ATGGCTTCCGCAACTGCCCCAAGATTCATCAAGTGCGTGACCGTTGGTGATGGAGCTGTAGGGAAGACCTGCATGCTCATTTGCTATACCAGCAACAAATTCCCCACGGACTATATCCCCACTGTGTTTGATAATTTCAGTGCAAATGTGGTTGTTGAAGGCATAACTGTCAACTTAGGCCTTTGGGATACAGCTGGGCAAGAGGATTACAACAGGCTGAGGCCCTTGAGCTACAGGGGGGCAGATGTCTTTGTCTTGGCTTTTTCTTTAGTTAGTCGCGCGAGCTATGAGAATGTGCTGAAGAAGTGGATCCCTGAACTCCAGCATTTTGCCCCTGGCATCCCGTTGGTGTTAGTTGGCACCAAATTGGATCTACGAGAAGACAAGCACTACATGGCTGATCATCCCAGCTTGGTGCCAGTGACTACTGATCAAGGTGAGGAACTCCGTAAACACATTGGAGCTACCTACTATATTGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGGCAGTTTTTGATGCTGCTATTAGAATGGTCATCAAGCCTCCACAAAAGCAAAACGAGAAAAGAAAGAAAAAACCACGTGGCTGTTTCCTAAACGTCCTCTGTCGAAGGAACATTGTTCGCCTTAAATGA 639 0.4679 MASATAPRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHFAPGIPLVLVGTKLDLREDKHYMADHPSLVPVTTDQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIRMVIKPPQKQNEKRKKKPRGCFLNVLCRRNIVRLK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01650 212 Gene3D - 3 201 IPR027417 -
Gma06g01650 212 SMART ras_sub_4 7 183 - -
Gma06g01650 212 SMART rab_sub_5 10 183 - -
Gma06g01650 212 ProSiteProfiles small GTPase Ras family profile. 5 203 IPR001806 GO:0003924|GO:0005525
Gma06g01650 212 ProSiteProfiles small GTPase Rab1 family profile. 3 212 - -
Gma06g01650 212 PRINTS Transforming protein P21 ras signature 10 31 - -
Gma06g01650 212 PRINTS Transforming protein P21 ras signature 33 49 - -
Gma06g01650 212 PRINTS Transforming protein P21 ras signature 50 72 - -
Gma06g01650 212 PRINTS Transforming protein P21 ras signature 112 125 - -
Gma06g01650 212 PRINTS Transforming protein P21 ras signature 158 180 - -
Gma06g01650 212 ProSiteProfiles small GTPase Rho family profile. 3 180 - -
Gma06g01650 212 PANTHER RHO FAMILY GTPASE 1 205 IPR003578 GO:0005525|GO:0007264
Gma06g01650 212 SMART rho_sub_3 12 183 IPR001806 GO:0003924|GO:0005525
Gma06g01650 212 Pfam Ras family 11 181 IPR001806 GO:0003924|GO:0005525
Gma06g01650 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 180 IPR027417 -
Gma06g01650 212 CDD Rop_like 9 181 - -
Gma06g01650 212 PANTHER - 1 205 - -
Gma06g01650 212 TIGRFAM small_GTP: small GTP-binding protein domain 10 174 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01650 Gma-Chr6 16366212 16370638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma06g01650 6 196 EF-hand Containing Proteins AT5G27540 24.742 2.27e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01650 K04392 - gmx:100527158 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01650 06 16366212 16370638 Gma06g01650 06 16366212 16370638 ECH
Gma04g01745 04 46903734 46907672 Gma06g01650 06 16366212 16370638 GST
Gma17g00864 17 7323117 7326587 Gma06g01650 06 16366212 16370638 PCT
Gma05g00334 05 3116889 3120864 Gma06g01650 06 16366212 16370638 PCT
Gma06g01650 06 16366212 16370638 Gma17g00864 17 7323117 7326587 PCT
Gma06g01650 06 16366212 16370638 Gma05g00334 05 3116889 3120864 PCT