Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00808 ATGGGAATGGAAGAGGAGAGTAGCATCATAGAAGGTGGTGCTTCGCTTCCATCGTCGGGTTCAGACGCCAAGAAGCGAAGAGTGACCTACTTCTACGAGCCCACCATCGGCGATTACTACTACGGTCAGGGGCACCCAATGAAGCCGCACCGAATCCGCATGGCGCACAACCTCATCGTCCACTACTCCCTCCACCGCCGCATGGAGATCAACCGCCCCTTCCCGGCCTCCCCCGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGACTTCCTCTCCTCCGTCTCCCCCGAGACCCTCGCCGATTCCGCCTTCTCTCGTCACCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCCCCTTCTGCCAGGCCTCCGCCGGTGGCTCCCTTGGCGCCGCCGTCAAACTCAACCGCGCTGACGCCGACATCGCCATCAATTGGGCCGGCGGCCTCCATCATGCCAAGAAGTCTGAGGCCTCTGGATTCTGCTACGTCAACGACATTGTCCTCGGCATCCTCGAACTTCTCAAGGCTCACAGGCGTGTGCTGTATGTTGACATTGATGTTCACCATGGTGATGGTGTTGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTGTCTTTCCACAAGTTTGGGGACTTTTTCCCTGGCACAGGGCACGTCAAAGACATTGGGGTGGGCTCAGGAAAGAATTATGCAGTAAATGTCCCATTAAATGATGGAATGGATGATGAGAGTTTCCGTAGTCTGTTTCGATCCATCATTCAAAAAGTCATGGAGGTTTATCAACCTGAGGCAGTTGTTCTACAATGTGGAGCTGATTCATTGTCTGGTGACAGATTGGGTTGCTTCAACTTGTCTGTGAGAGGTCATGCAGATTGCCTTCGTTTTCTTAGATCGTTCAATGTTCCTTTAATGGTCTTGGGTGGGGGTGGATATACAATTCGGAATGTTGCCCGTTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGCCCAGATTATACTCTCTATGTCGATCCAAGCAACATGGAGAACCTAAACACATCCAAGGATTTGGAAAAATTAAGGAACACACTACTAGAACAGATTTCCCGACTTCCACATGCTCCCAGTGTACCTTTTCAGACAACACCACCTACCTTGCAACTTCCGGAAGAGGCGGAAGAGAACATGGATAGAAGACCAAAACTTCGCAAATGGGATGGTGAAGATTATGATTCTGATCCCGAAGAAGGTGGAAAGGATAATTCCAAGTTCTCAAACATCACTGCCCATATGAGGGACATTGCAGATGAAATGGAAGAAGAGAAGCCAGAAGAGCATCCATCATCTTGTAGTTGA 1419 0.506 MGMEEESSIIEGGASLPSSGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASPADIRRFHSDDYVDFLSSVSPETLADSAFSRHLKRFNVGEDCPVFDGLFPFCQASAGGSLGAAVKLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKAHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHVKDIGVGSGKNYAVNVPLNDGMDDESFRSLFRSIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTSKDLEKLRNTLLEQISRLPHAPSVPFQTTPPTLQLPEEAEENMDRRPKLRKWDGEDYDSDPEEGGKDNSKFSNITAHMRDIADEMEEEKPEEHPSSCS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00808 472 PANTHER HISTONE DEACETYLASE 6 12 442 - -
Gma17g00808 472 MobiDBLite consensus disorder prediction 395 409 - -
Gma17g00808 472 PRINTS Histone deacetylase superfamily signature 156 179 IPR000286 -
Gma17g00808 472 PRINTS Histone deacetylase superfamily signature 188 203 IPR000286 -
Gma17g00808 472 PRINTS Histone deacetylase superfamily signature 273 283 IPR000286 -
Gma17g00808 472 Gene3D Histone deacetylase domain 24 399 IPR037138 -
Gma17g00808 472 CDD HDAC_classI 31 338 - -
Gma17g00808 472 Pfam Histone deacetylase domain 45 336 IPR023801 -
Gma17g00808 472 PIRSF HDAC_I_euk 12 470 IPR003084 GO:0004407|GO:0016575
Gma17g00808 472 PRINTS Histone deacetylase signature 47 64 IPR003084 GO:0004407|GO:0016575
Gma17g00808 472 PRINTS Histone deacetylase signature 80 98 IPR003084 GO:0004407|GO:0016575
Gma17g00808 472 PRINTS Histone deacetylase signature 113 130 IPR003084 GO:0004407|GO:0016575
Gma17g00808 472 PRINTS Histone deacetylase signature 134 154 IPR003084 GO:0004407|GO:0016575
Gma17g00808 472 PRINTS Histone deacetylase signature 175 191 IPR003084 GO:0004407|GO:0016575
Gma17g00808 472 PRINTS Histone deacetylase signature 234 247 IPR003084 GO:0004407|GO:0016575
Gma17g00808 472 PRINTS Histone deacetylase signature 251 269 IPR003084 GO:0004407|GO:0016575
Gma17g00808 472 MobiDBLite consensus disorder prediction 392 472 - -
Gma17g00808 472 SUPERFAMILY Arginase/deacetylase 26 391 IPR023696 -
Gma17g00808 472 MobiDBLite consensus disorder prediction 412 441 - -
Gma17g00808 472 MobiDBLite consensus disorder prediction 451 472 - -
Gma17g00808 472 MobiDBLite consensus disorder prediction 1 22 - -
Gma17g00808 472 PANTHER HISTONE DEACETYLASE 12 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00808 Gma-Chr17 6769260 6773231 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00808 K06067 - gmx:100819221 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00808 17 6769260 6773231 Gma17g00808 17 6769260 6773231 ECH
Gma17g00808 17 6769260 6773231 Gma05g00388 05 3654169 3658184 GST
Gma17g00808 17 6769260 6773231 Gma04g01811 04 48189666 48194708 PCT
Gma17g00808 17 6769260 6773231 Gma06g01596 06 15533288 15538645 PCT
Gma04g01811 04 48189666 48194708 Gma17g00808 17 6769260 6773231 PCT
Gma06g01596 06 15533288 15538645 Gma17g00808 17 6769260 6773231 PCT