Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g01596 ATGGCGAGAGGGGAGAGAGCTGAGACAGTGAGTGGCGTCCcGTTGCCGTCGGTGGGCACGGACGCGAAGAAGCGGAGAATGACGTACTTCTACGAGCCGTGCATCGGCTACTACTTCTACGGGCAAGGGCACCCGATGAAGCCGCACCGCTTTCGCATGGCCCACAACCTCATCGTGCACTACGGCCTCCACCGCCGCATGCAGGTCAACCGCCCCTTCCCCGCCGCGGAGGCCGACATCGGCCGCTTCCACTCCGACGACTACGTCGACTTCCTCTCCACCGTCTCGCCGCAAATCCTCTCCCAGAATTCCCACTCCCACTACCGCCAGCTCAAGCGCTTCAACGTCGGCGAGGATTGCCCCGTCTTCGACGGCCTCTTCGACTTCTGCCGCGCCTTCCCCGGCGGCTCCATCGGCGCCGCCGTCCGCCTCAACCGCGGCGACGCCGATATCGCCATTAATTGGGCCGGCGGCCTGCACCACGCCAAGAAGGCCGAGGCCTCCGGGTTTTGCTATGTTAACGACATTGTTCTCGGCATTCTTGAACTTCTCAAAGTTCATACCGTGCTGTATATTGATATTGATGTTCACCATGGAGATGGCGTTGAGGAGGCATTTTACACTACTGATAGGGTGATGACAGTGTCGTTTCATAAGTTTAGGGATTTTTTCCCAGGAACTGGGCACAGTAAAGACATTGGGGTGGGTGCTGGAAAGAATTATTCTCTAAATGTCCCACTCAATGATGGATTGGATGATGAGACTTTCTGTGGTCTGTTTCGCCCCATCATTCAAAAAGTTATGGACATCTATCAACCGGATGCAGTTGTTCTTCAATGTGGAGCTGACTCGTTGTCTGGTGACCAGTTGGGTTGCTTCAACTTGACTGTGAAGGGTCATGCAGATTGCCTTCGTTTCCTTAGATCATTCAGTGTTCCTCTAATGGTCTTGGGTGGGGGAGGATATACAGTTCAGAATGTTGCTCGTTGTTGGACTTATGAGACTGCAGTGGCAGTAGGAGTGGAGCCTAGCCCTAAGGATCTGGAAAAAATTCGGAATACATTACTGGAACAACTTTCCAGGCTTCCCCATGCACCCAATGCACCTTTTCAAACAACACCATCAGTCATAGAAGTTCCAGAAGAGGAAGAGGAGGACATGGATGTAAGACCAAAACCTTGTATATGGAGTTGTGAAGATTTTGATTCTGATCATGATGATGACATGGGTAGTTCAAAGAACTCTGATTTAACTGCCCAAACGATGTCTGTTGCAGATGACATGGACGAAGATTAA 1296 0.5201 MARGERAETVSGVPLPSVGTDAKKRRMTYFYEPCIGYYFYGQGHPMKPHRFRMAHNLIVHYGLHRRMQVNRPFPAAEADIGRFHSDDYVDFLSTVSPQILSQNSHSHYRQLKRFNVGEDCPVFDGLFDFCRAFPGGSIGAAVRLNRGDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHTVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFRDFFPGTGHSKDIGVGAGKNYSLNVPLNDGLDDETFCGLFRPIIQKVMDIYQPDAVVLQCGADSLSGDQLGCFNLTVKGHADCLRFLRSFSVPLMVLGGGGYTVQNVARCWTYETAVAVGVEPSPKDLEKIRNTLLEQLSRLPHAPNAPFQTTPSVIEVPEEEEEDMDVRPKPCIWSCEDFDSDHDDDMGSSKNSDLTAQTMSVADDMDED 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g01596 431 CDD HDAC_classI 30 338 - -
Gma06g01596 431 MobiDBLite consensus disorder prediction 398 431 - -
Gma06g01596 431 PANTHER HISTONE DEACETYLASE 6 11 345 - -
Gma06g01596 431 PANTHER HISTONE DEACETYLASE 6 344 411 - -
Gma06g01596 431 MobiDBLite consensus disorder prediction 398 412 - -
Gma06g01596 431 PANTHER HISTONE DEACETYLASE 11 345 - -
Gma06g01596 431 PANTHER HISTONE DEACETYLASE 344 411 - -
Gma06g01596 431 PRINTS Histone deacetylase superfamily signature 188 203 IPR000286 -
Gma06g01596 431 PRINTS Histone deacetylase superfamily signature 157 180 IPR000286 -
Gma06g01596 431 PRINTS Histone deacetylase superfamily signature 273 283 IPR000286 -
Gma06g01596 431 Pfam Histone deacetylase domain 44 336 IPR023801 -
Gma06g01596 431 SUPERFAMILY Arginase/deacetylase 26 349 IPR023696 -
Gma06g01596 431 Gene3D Histone deacetylase domain 17 374 IPR037138 -
Gma06g01596 431 PRINTS Histone deacetylase signature 135 155 IPR003084 GO:0004407|GO:0016575
Gma06g01596 431 PRINTS Histone deacetylase signature 176 192 IPR003084 GO:0004407|GO:0016575
Gma06g01596 431 PRINTS Histone deacetylase signature 234 247 IPR003084 GO:0004407|GO:0016575
Gma06g01596 431 PRINTS Histone deacetylase signature 79 97 IPR003084 GO:0004407|GO:0016575
Gma06g01596 431 PRINTS Histone deacetylase signature 114 131 IPR003084 GO:0004407|GO:0016575
Gma06g01596 431 PRINTS Histone deacetylase signature 251 269 IPR003084 GO:0004407|GO:0016575
Gma06g01596 431 PRINTS Histone deacetylase signature 46 63 IPR003084 GO:0004407|GO:0016575
Gma06g01596 431 PIRSF HDAC_I_euk 13 346 IPR003084 GO:0004407|GO:0016575
Gma06g01596 431 PIRSF HDAC_I_euk 341 430 IPR003084 GO:0004407|GO:0016575
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g01596 Gma-Chr6 15533288 15538645 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g01596 K06067 - gmx:100801159 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g01596 06 15533288 15538645 Gma06g01596 06 15533288 15538645 ECH
Gma04g01811 04 48189666 48194708 Gma06g01596 06 15533288 15538645 GST
Gma17g00808 17 6769260 6773231 Gma06g01596 06 15533288 15538645 PCT
Gma05g00388 05 3654169 3658184 Gma06g01596 06 15533288 15538645 PCT
Gma06g01596 06 15533288 15538645 Gma17g00808 17 6769260 6773231 PCT
Gma06g01596 06 15533288 15538645 Gma05g00388 05 3654169 3658184 PCT