Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00388 ATGGGAATGGAAGAGGAGAGTAGCAACAACAGCAGCATCATAGAAGGTGGTGCTTCGCTGCCATCAACGGGTTCAGACGCCAAGAAGCGAAGAGTGACGTACTTCTACGAGCCCACGATCGGCGATTACTACTACGGTCAGGGGCACCCAATGAAGCCGCACCGAATCCGCATGGCGCACAACCTCATCGTCCACTACTCCCTCCACCGCCGCATGGAGATCAACCGTCCCTTCCCGGCCTCCCCCGCCGACATCCGCCGCTTCCACTCCGACGACTACGTCGACTTTCTCTCCTCCGTCTCCCCCGAGACCCTCGCCGATTCCGCCTTCTCCCGCCACCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCCCCTTCTGCCAGGCCTCCGCCGGCGGCTCCCTCGGCGCCGCCGTCAAACTCAACCGCGCCGACGCCGACATCGCCATCAATTGGGCCGGCGGCCTCCACCACGCCAAGAAGTCCGAGGCCTCTGGATTCTGCTACGTCAACGACATTGTCCTCGGTATCCTCGAACTCCTCAAAGTTCACAGGCGCGTGCTGTATGTTGACATTGATGTTCACCATGGTGATGGTGTTGAGGAGGCCTTTTACACCACTGATAGAGTGATGACAGTGTCTTTCCATAAGTTTGGGGACTTTTTCCCTGGCACAGGACACGTCAAGGACATTGGGGTGGGATCAGGAAAGAATTATGCAGTCAATGTCCCATTAAATGACGGAATGGATGATGAGAGTTTCCGTAGTCTGTTTCGAACCATCATTCAAAAAGTCATGGAGGTCTATCAACCAGAGGCAGTTGTTCTACAATGTGGAGCTGATTCATTGTCTGGGGACAGGTTGGGTTGCTTCAACTTGTCTGTGAGAGGTCATGCAGATTGCCTTCGTTTTCTTAGATCGTTCAATGTTCCTTTAATGGTCTTGGGTGGGGGTGGATATACAATTCGGAATGTTGCCCGTTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTGATAATAAGTTGCCTTATAATGAATATTATGAATATTTTGGCCCAGATTATACTCTCTATGTCGATCCAAGCAACATGGAGAACCTAAACACACCCAAGGATATGGAAAAAATAAGGAACACACTACTAGAACAGATTTCTCAACTTCCCCATGCTCCCGGTGTACCTTTTCAGACAACACCACCTACCTTACAACTTCCGGAAGAGGCAGAAGAGGACATGGATAGAAGACCTAAACTTCGCAAATGGGATGGTGAAGATTATGATTCTGATCCTGATGAAGGTGGAAAGGCTAATTCCAAGTTTCCAAACGTCACTGCCCATATGAGGGACATTACAGATGAAATGGAAGAAGAGAAACCAGAAGTGCATCCATCATCTTGTTGTTGA 1431 0.5108 MGMEEESSNNSSIIEGGASLPSTGSDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYSLHRRMEINRPFPASPADIRRFHSDDYVDFLSSVSPETLADSAFSRHLKRFNVGEDCPVFDGLFPFCQASAGGSLGAAVKLNRADADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHVKDIGVGSGKNYAVNVPLNDGMDDESFRSLFRTIIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVRGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYYEYFGPDYTLYVDPSNMENLNTPKDMEKIRNTLLEQISQLPHAPGVPFQTTPPTLQLPEEAEEDMDRRPKLRKWDGEDYDSDPDEGGKANSKFPNVTAHMRDITDEMEEEKPEVHPSSCC 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00388 476 SUPERFAMILY Arginase/deacetylase 30 395 IPR023696 -
Gma05g00388 476 PRINTS Histone deacetylase superfamily signature 160 183 IPR000286 -
Gma05g00388 476 PRINTS Histone deacetylase superfamily signature 192 207 IPR000286 -
Gma05g00388 476 PRINTS Histone deacetylase superfamily signature 277 287 IPR000286 -
Gma05g00388 476 PANTHER HISTONE DEACETYLASE 6 16 446 - -
Gma05g00388 476 MobiDBLite consensus disorder prediction 1 25 - -
Gma05g00388 476 MobiDBLite consensus disorder prediction 416 443 - -
Gma05g00388 476 PIRSF HDAC_I_euk 13 473 IPR003084 GO:0004407|GO:0016575
Gma05g00388 476 PRINTS Histone deacetylase signature 51 68 IPR003084 GO:0004407|GO:0016575
Gma05g00388 476 PRINTS Histone deacetylase signature 84 102 IPR003084 GO:0004407|GO:0016575
Gma05g00388 476 PRINTS Histone deacetylase signature 117 134 IPR003084 GO:0004407|GO:0016575
Gma05g00388 476 PRINTS Histone deacetylase signature 138 158 IPR003084 GO:0004407|GO:0016575
Gma05g00388 476 PRINTS Histone deacetylase signature 179 195 IPR003084 GO:0004407|GO:0016575
Gma05g00388 476 PRINTS Histone deacetylase signature 238 251 IPR003084 GO:0004407|GO:0016575
Gma05g00388 476 PRINTS Histone deacetylase signature 255 273 IPR003084 GO:0004407|GO:0016575
Gma05g00388 476 CDD HDAC_classI 35 342 - -
Gma05g00388 476 MobiDBLite consensus disorder prediction 398 412 - -
Gma05g00388 476 Pfam Histone deacetylase domain 49 340 IPR023801 -
Gma05g00388 476 MobiDBLite consensus disorder prediction 1 19 - -
Gma05g00388 476 Gene3D Histone deacetylase domain 28 403 IPR037138 -
Gma05g00388 476 MobiDBLite consensus disorder prediction 398 453 - -
Gma05g00388 476 PANTHER HISTONE DEACETYLASE 16 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00388 Gma-Chr5 3654169 3658184 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00388 K06067 - gmx:100807923 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00388 05 3654169 3658184 Gma05g00388 05 3654169 3658184 ECH
Gma17g00808 17 6769260 6773231 Gma05g00388 05 3654169 3658184 GST
Gma05g00388 05 3654169 3658184 Gma04g01811 04 48189666 48194708 PCT
Gma05g00388 05 3654169 3658184 Gma06g01596 06 15533288 15538645 PCT
Gma04g01811 04 48189666 48194708 Gma05g00388 05 3654169 3658184 PCT
Gma06g01596 06 15533288 15538645 Gma05g00388 05 3654169 3658184 PCT