Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01811 ATGGCGAGAGGGGAGAGAGCGGAGACAGAGAGTGGCGTTTCGTTGCCCTCGGTGGGCACGGACGCGAAGAAGCGGAGAGTAACGTACTTCTACGAGCCGTGCATCGGCGACTACTACTACGGGCAAGGGCATCCGATGAAGCCTCACCGCATTCGCATGGCCCACAACCTCATCGTTCACTACGGCCTCCACCGCCGCATGCAGGTCAACCGCCCCTTCCCCGCGGCGGAGGCCGACATCGGCCGCTTCCACGCCGACGACTACGTCGACTTCCTCTCCACCGTCTCGCCGCAAATCCTCTCCGAGAATTCCCACTCCCACTACCGTCAGCTCAAGCGCTTCAACGTCGGCGAGGACTGCCCCGTCTTCGACGGCCTCTTCGACTTCTGCCGCGCCTCCGCCGGCGGCTCCATCGGCGCCGCCGTCCGCCTCAACCGCGAAGACGCCGACGTCGCCATCAATTGGGCCGGCGGCCTGCACCACGCCAAGAAGGCCGAGGCCTCCGGGTTTTGCTATGTTAACGACATTGTTCTCGGCATTCTAGAACTTCTCAAAGTTCATAGGCGTGTGCTGTATATTGATATTGATGTTCACCATGGAGATGGCGTTGAGGAGGCATTTTACACTACTGATAGGGTGATGACAGTGTCATTTCATAAGTTTGGGGATTTTTTCCCAGGAACTGGGCACATTAAAGACATTGGGGTGGGTGCTGGAAAGAATTATTCTCTAAACGTCCCACTCAATGATGGATTGGATGATGAGACTTTCCGTGGTCTGTTTCGCCCCATCATTCAAAAAGTCATGGATGTTTATCAACCGGATGCAGTTGTTCTTCAATGTGGAGCTGACTCGTTGTCTGGTGATCGGTTGGGTTGCTTCAACTTGACTGTGAAGGGCCATGCAGATTGCCTTCGTTTCCTTAGATCATTCAATGTCCCTCTAATGGTCTTGGGTGGGGGAGGATATACGGTTCGCAATGTTGCTCGTTGTTGGTGTTATGAGACTGCAGTGGCAGTAGGAGTGGAGCCTAGTCCTAAGTTGCCTTACAATGAATATTATGAATATTTTGGCCCGGACTATAATCTTCATGTTGAGCCATCCACAATGGAAAACCTAAACACACCCAGGGATCTGGAAAAAATTCGGAATACATTACTGGAACAACTTTCCAGGCTTCCCCATGCACCCAGTGCACCTTTTCAAACAACACCATCGGTCATCGAAGTTCCAGAAGAGGAAGAGGAGGACATGGATGTAAGGCCAAAACGTCGTATATGGAGTGGTGAAGATTTTGATTCGGATCATGATGATGACATGGCTAGTTCAAAGAACTCTGATTTAACTGCACAAACGAGCAGGTCTGTTGCAGATGACATGGACGAAGATAAAGATTAA 1398 0.5186 MARGERAETESGVSLPSVGTDAKKRRVTYFYEPCIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMQVNRPFPAAEADIGRFHADDYVDFLSTVSPQILSENSHSHYRQLKRFNVGEDCPVFDGLFDFCRASAGGSIGAAVRLNREDADVAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGAGKNYSLNVPLNDGLDDETFRGLFRPIIQKVMDVYQPDAVVLQCGADSLSGDRLGCFNLTVKGHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPSPKLPYNEYYEYFGPDYNLHVEPSTMENLNTPRDLEKIRNTLLEQLSRLPHAPSAPFQTTPSVIEVPEEEEEDMDVRPKRRIWSGEDFDSDHDDDMASSKNSDLTAQTSRSVADDMDEDKD 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01811 465 PRINTS Histone deacetylase signature 46 63 IPR003084 GO:0004407|GO:0016575
Gma04g01811 465 PRINTS Histone deacetylase signature 79 97 IPR003084 GO:0004407|GO:0016575
Gma04g01811 465 PRINTS Histone deacetylase signature 114 131 IPR003084 GO:0004407|GO:0016575
Gma04g01811 465 PRINTS Histone deacetylase signature 135 155 IPR003084 GO:0004407|GO:0016575
Gma04g01811 465 PRINTS Histone deacetylase signature 176 192 IPR003084 GO:0004407|GO:0016575
Gma04g01811 465 PRINTS Histone deacetylase signature 235 248 IPR003084 GO:0004407|GO:0016575
Gma04g01811 465 PRINTS Histone deacetylase signature 252 270 IPR003084 GO:0004407|GO:0016575
Gma04g01811 465 MobiDBLite consensus disorder prediction 393 465 - -
Gma04g01811 465 MobiDBLite consensus disorder prediction 417 443 - -
Gma04g01811 465 CDD HDAC_classI 30 339 - -
Gma04g01811 465 PANTHER HISTONE DEACETYLASE 11 444 - -
Gma04g01811 465 PANTHER HISTONE DEACETYLASE 6 11 444 - -
Gma04g01811 465 SUPERFAMILY Arginase/deacetylase 25 392 IPR023696 -
Gma04g01811 465 Pfam Histone deacetylase domain 44 337 IPR023801 -
Gma04g01811 465 Gene3D Histone deacetylase domain 16 405 IPR037138 -
Gma04g01811 465 PIRSF HDAC_I_euk 8 465 IPR003084 GO:0004407|GO:0016575
Gma04g01811 465 PRINTS Histone deacetylase superfamily signature 157 180 IPR000286 -
Gma04g01811 465 PRINTS Histone deacetylase superfamily signature 189 204 IPR000286 -
Gma04g01811 465 PRINTS Histone deacetylase superfamily signature 274 284 IPR000286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01811 Gma-Chr4 48189666 48194708 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01811 K06067 - gmx:100801159 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01811 04 48189666 48194708 Gma04g01811 04 48189666 48194708 ECH
Gma04g01811 04 48189666 48194708 Gma06g01596 06 15533288 15538645 GST
Gma17g00808 17 6769260 6773231 Gma04g01811 04 48189666 48194708 PCT
Gma05g00388 05 3654169 3658184 Gma04g01811 04 48189666 48194708 PCT
Gma04g01811 04 48189666 48194708 Gma17g00808 17 6769260 6773231 PCT
Gma04g01811 04 48189666 48194708 Gma05g00388 05 3654169 3658184 PCT