LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma17g00571	ATGGCAACTGAGAATCCAATTAGAATCTCTGAAGCTGGGAGTAAATGGCCGTTTCATGGTCGTGGAAAGGATGTGGTACCCAACAGCAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCATTTCTGGCCATAGAAAGCTTGTTATCCCAGAACACCACCTGGAATGCGAGCTTGGGATCTCTGAACAGAGATATGCAAAAAGATGATAGTGGTAAAGGGTCTTTATATTTGTCACGAGGAACTCTTGCAACACACAAGGAGGAGTCTGAGGATTATTCAACCCAACAGATGTATGATAATGAGTTAGACAAAGCTATTGGAAAATGGCATAGACAGGATGTGGCTTCAACATCATCTCAGCACACACATTTAGTAATGGAAGATTTTCCCCATAACATGTCACCTGTATATAATAAGTTTCTTGGAGTGGTGGATGAACTAATTGGCATAGATACTGGTTCCAGTTCTTCTCATGGTCCTCCTGTCACTACAGTGGATGCTGTAAAACCTACCATAGGTGCAGATGATATAAGACTGTCATCAACTGTTGATTCCCCTGCCCCAGTCACAAGTTCATCATCTCTAAATTCCACTGGAAGCATGGGTTTTAATGACTTACATGTTACAATTGTAGAATCACAATTAAGGGCTCTCAGTGTATCTAATCTACCAAATTCAGAAAGTCGGAGTTATGAAGATAAATGGGAGAACAGCTTCCAGAATAATTTGATGCAACACCAGCTACAAAACTATCCATGTGAAGTGCCTAGCACCAATTCTCAAAGTGAAAAATGCACATATGTTGGTATGGAGCAGTTTCTTCACAATCCCAGCAAGTTCTCCTCTGATGTACAGCCTGTACTGCAATCATCAGGATATACACCTCCACTATATGCTACAGCAGCTGCTTATATGACCTCAGCTTCGGGTATATATTCTCTGCAATATGTAGGTGCATACCCATTTAGTCCCACAGCTGTTCCTCCATATATTGCTGCATACCCTCCTCATGGTTCTGTACCACTTGTTGACGGGGCTACTGGTTCTAGTTTTACTCCCCAAGCACCAGGGGTTTCTTCTACTGCAGGAAACAATTCACACGGAGCTGAAATGATGCATGCAATCAAGTTTTTTGGACAATTTGGATTTCCTCTGCAGCCTTCTTTTGGTGATCCTATTTTCATGCAATATCATCAACAACCTTTTGCGGAGGGATATGGTGTATCTGGTCATCTGCTGGCTCCTAGAGCCAGTGTTGGTGGCCAAATTGGTCCTTTTGATTCCCAAAAAAGGCCCAGTAGTGGTGCTTACTTGGATGACAAAAAATATCCAAGTTCTCCACTTTCTAGACCAGTTTTATCAGGATACCCAGAAAGTAGAAATGGAGGTTTATTATCTGGATGGCAAGCTCAAAGAGCATTTGACAGTGCTCACAACCCCAAAATTGCTATTTTTCTTGAATACACTGCTCAGCATGGGAGCTGTTTTATACAGCAGAAGTTGGAAAGCTGCTGTGTTAAAGAGAAGGAGTTAGTGTTCAAAGAGGTTCTTCCACATACTTCAAAATTAATGACTGATGTATTTGGAAACTATGTAATCCAAAAGTTTTTTGAGTATGGAAGTCCTGAGCAGAGAAAGGAACTTGCAAATCGACTTCTTTGTCAGATACCGCCTTTAGGTCTGCAGATGTATGGCTGTTGTGTAGTCCAAAAGGCACTTGAGGCTATCGATCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTACGTGACCAAAATGGGAATCATAGAACCAAACACCTGGACCATGATGACAATAAAGGTCTTGCACAATGCTTCACTGCAAAGACAACAACTAAGTTGTATTTCTGTTGTGTCACAGGAAACAGATGA	1914	0.4185	MATENPIRISEAGSKWPFHGRGKDVVPNSSGSAPPSMEGSFLAIESLLSQNTTWNASLGSLNRDMQKDDSGKGSLYLSRGTLATHKEESEDYSTQQMYDNELDKAIGKWHRQDVASTSSQHTHLVMEDFPHNMSPVYNKFLGVVDELIGIDTGSSSSHGPPVTTVDAVKPTIGADDIRLSSTVDSPAPVTSSSSLNSTGSMGFNDLHVTIVESQLRALSVSNLPNSESRSYEDKWENSFQNNLMQHQLQNYPCEVPSTNSQSEKCTYVGMEQFLHNPSKFSSDVQPVLQSSGYTPPLYATAAAYMTSASGIYSLQYVGAYPFSPTAVPPYIAAYPPHGSVPLVDGATGSSFTPQAPGVSSTAGNNSHGAEMMHAIKFFGQFGFPLQPSFGDPIFMQYHQQPFAEGYGVSGHLLAPRASVGGQIGPFDSQKRPSSGAYLDDKKYPSSPLSRPVLSGYPESRNGGLLSGWQAQRAFDSAHNPKIAIFLEYTAQHGSCFIQQKLESCCVKEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANRLLCQIPPLGLQMYGCCVVQKALEAIDLEQKAQLVHELDGNVMRCVRDQNGNHRTKHLDHDDNKGLAQCFTAKTTTKLYFCCVTGNR	637

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma17g00571	637	MobiDBLite	consensus disorder prediction	423	452	-	-
	Gma17g00571	637	Gene3D	-	474	620	IPR011989	-
	Gma17g00571	637	SMART	pum_5	481	514	IPR001313	GO:0003723
	Gma17g00571	637	SMART	pum_5	551	586	IPR001313	GO:0003723
	Gma17g00571	637	SMART	pum_5	515	550	IPR001313	GO:0003723
	Gma17g00571	637	PANTHER	RNA BINDING PROTEIN PUMILIO-RELATED	25	603	-	-
	Gma17g00571	637	SUPERFAMILY	ARM repeat	489	605	IPR016024	-
	Gma17g00571	637	MobiDBLite	consensus disorder prediction	1	37	-	-
	Gma17g00571	637	Pfam	Pumilio-family RNA binding repeat	491	517	IPR001313	GO:0003723
	Gma17g00571	637	Pfam	Pumilio-family RNA binding repeat	556	588	IPR001313	GO:0003723
	Gma17g00571	637	Pfam	Pumilio-family RNA binding repeat	522	551	IPR001313	GO:0003723
	Gma17g00571	637	ProSiteProfiles	Pumilio homology domain (PUM-HD) profile.	452	637	IPR033133	GO:0003723
	Gma17g00571	637	ProSiteProfiles	Pumilio RNA-binding repeat profile.	515	550	IPR001313	GO:0003723
	Gma17g00571	637	ProSiteProfiles	Pumilio RNA-binding repeat profile.	551	586	IPR001313	GO:0003723
	Gma17g00571	637	PANTHER	PUMILIO HOMOLOG 6, CHLOROPLASTIC	25	603	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma17g00571	Gma-Chr17	4734578	4741386	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma17g00571	K17943		-	gmx:100819166	974.541

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma17g00571	17	4734578	4741386	Gma13g00794	13	22220227	22228573	GST
	Gma17g00571	17	4734578	4741386	Gma15g01526	15	14278262	14285341	PCT
	Gma17g00571	17	4734578	4741386	Gma09g00520	09	5373701	5381879	PCT
	Gma15g01526	15	14278262	14285341	Gma17g00571	17	4734578	4741386	PCT
	Gma09g00520	09	5373701	5381879	Gma17g00571	17	4734578	4741386	PCT