Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00794 ATGGCAACTGAGAGTCCAATTAGAATCTCTGAAGCTGGGAGTAAATGGCCGTCTCTTAAGGAAGCTGCAACTTTTGGCTCGCCATCCCGTCACATGGCAACAGAGGATCTGGGTATATTTTTAAATGGCCATAGGTTTCATGGCAGTGGAAAGGATGCAGTACCCAACCGCAGTGGCAGTGCACCTCCGAGCATGGAAGGCTCATTTCTGGCCATAGAAAACTTGTTATCCCAGAACACCACCAGGAATGCGAGCTTGGGATCTCGGAACAGAGCTATGCAAAAATATGATAGTGGTAAAGGGTCTTTTCATTTGTCACAAGGAACTCTTGCAACACACAAGGAGGAGTCTGAGGATGATTTGACCCAAAAGCTGTATAATAATTTGTTAGACAAAGCTAGTGGAAAATGGCATAGACAGGATGCGGCTTCAACATCATCTCAGGACACAAATTTAGTACTGGAAGATTTTCCCCATATCATGTCACCTGTATATAATAAGTCTCTTGGAGTGGTGGATGAACTAATTGATGTGGATACTGGTTCCAGTTCTTCTCTTGGCCCTCCTGTCACCACAGTGGATGCTGTAAAACCTACCATAGGTGCAGATGATGTAAGGCTGTCATCAACTGTTGATTCCCGTGCCCCTGTCACAAGCTCATCATCTCTCAATTCCACTGGAAGCATGGGATTTAATGTCTTAGATGTTACAATTGTAGAATCTCAATTAAGGGCTCTCAATGTATCTAATCTACCAAATTCAGAAAGCCAGAGTTATGAAGATAAATGGAAGAACAGCTGCCAGAATAATTTGATGCAACACCAGCAACAAAACTATCCATGTGTGGTGCCTAACACCAATTCTCAAAGTGAAAAATGCACATATGTTGGTATGGAGCAGTTTCTTCACAATCCCAGCAAGTTCTCCTCTGATGTCCAGCCTGTACTGCAATCATCAGGGTATACGCCTCCACTATATGCTACAGCAGCAGCAGCTTATATGACCTCAGCAAATCCATTTTACACTAATTTGCAGGCTTCGGGTATATATTCTCCGCAATATATAGGTGCATACCCTTTTAGTCCCACAGCTGTTCCTCCATATATTGCTGCATACCCTCCTCATGGTTCTGTACCACTTGTTGACGGGGCTACTGGTTCTAGTTTTACTCCCCAAGCACCAGGGATTTCTTCTACTGCAGGAAACATTTCACACGGAGCTGAAATGATGCATGCAAACAAGTTTTTTGGACAATTTGGATTTCCTCTGCAGCCTTCTTTTAGTGATCCTATTTACATGCAATATCATCAACAACCTTTTGTGGAGGGATATGGTGTATCTGCTCATCTGCTGGCACCTAGAGCCAGTGTTGGCGGCCAAATTGGTCCCTTTGATTCCCAAAAAAGGCCCAATAGTGGTGCTTACTTGGATGACAAAAAATTACATAATCAGAAAACTGGTGCTAATTTGAATTCTAATAGAGATGGGCTAATACACCCTGGTTATTTTGGACACCCTTCAAATTTGGGTTTTGTACCCCAGTATCCAAGTTCCCCACTTTGTAGACCAGTTTTATCAGGATACCCAGAAAGTAGTCCTGGCCTTCTAGGTGGAAGGAATGAAATGAAACGCTCTCCAGCTTCTGGTAGAAATGGAGGTTTATTATCTGGATGGCAAGGTCAAAGAGCCTTTGACAGTGCTCATGACCCCAAAATTGCTATTTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCCGATATTATTGGACATATAGTTGAATTTAGCACTGATCAGCATGGGAGCCGTTTTATACAGCAGAAGTTGGAAAGCTGTGGCGTTGAAGAGAAGGAATTAGTATTCAAAGAGGTTCTTCCACATACTTCAAAATTAATGACTGATGTATTTGGCAACTATGTAATCCAAAAGTTTTTTGAGTATGGAAGCCCTGAGCAGAGAAAGGAACTTGCAAATCGACTTCTTGGCCAGATACTGCCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATCGATCTTGAACAGAAAGCTCAACTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTCCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACTAAAAACATTGACTTTATAATATCTGCATTTCGTGGTCAAATTGCTCTTCTATCTATGCATCCATATGGTTGCCGAGTCATACAGAGAGTTCTAGAGCATTGTTCAAATGAGGTTCAATGTCAGTTTATTGTTGATGAAATCTTGGAGTCAGTTTTTACTCTTGCTCAGGACCAGTATGGGAATTATGTTACGCAGCATGTGTTGGAGAGAGGAAAGCCTCAGGAAAGGAGTCAAATTATTCACAAGCTATCTGGACATATTTTCCAATTAAGCCAGCATAAATTTGCATCAAATGTTGTTGAGAAATGTTTGGAGTATGGTGATGCTACTGATCGGCAGTTGTTAATTGCGGAGATTGTTGGACATGACAAACAAAATGATAATTTATTGACAATGATGAAAGACCAATTTGCAAATTATGTGATCCAGAAGGTTTTTGAGATCTGTTCTGAAAATCAGCGAGCAACATTACTTTCTCGCATAAGACTTCATGCTCATGCTTTGAAAAAATACACTTATGGAAAACACATTGTGGCTCGGTTTGAACAGCTACTTGGAGAAGAGAACCAAACAAATGGATCATGA 2763 0.4122 MATESPIRISEAGSKWPSLKEAATFGSPSRHMATEDLGIFLNGHRFHGSGKDAVPNRSGSAPPSMEGSFLAIENLLSQNTTRNASLGSRNRAMQKYDSGKGSFHLSQGTLATHKEESEDDLTQKLYNNLLDKASGKWHRQDAASTSSQDTNLVLEDFPHIMSPVYNKSLGVVDELIDVDTGSSSSLGPPVTTVDAVKPTIGADDVRLSSTVDSRAPVTSSSSLNSTGSMGFNVLDVTIVESQLRALNVSNLPNSESQSYEDKWKNSCQNNLMQHQQQNYPCVVPNTNSQSEKCTYVGMEQFLHNPSKFSSDVQPVLQSSGYTPPLYATAAAAYMTSANPFYTNLQASGIYSPQYIGAYPFSPTAVPPYIAAYPPHGSVPLVDGATGSSFTPQAPGISSTAGNISHGAEMMHANKFFGQFGFPLQPSFSDPIYMQYHQQPFVEGYGVSAHLLAPRASVGGQIGPFDSQKRPNSGAYLDDKKLHNQKTGANLNSNRDGLIHPGYFGHPSNLGFVPQYPSSPLCRPVLSGYPESSPGLLGGRNEMKRSPASGRNGGLLSGWQGQRAFDSAHDPKIAIFLEELKSGKGRRFELSDIIGHIVEFSTDQHGSRFIQQKLESCGVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANRLLGQILPLSLQMYGCRVIQKALEVIDLEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKNIDFIISAFRGQIALLSMHPYGCRVIQRVLEHCSNEVQCQFIVDEILESVFTLAQDQYGNYVTQHVLERGKPQERSQIIHKLSGHIFQLSQHKFASNVVEKCLEYGDATDRQLLIAEIVGHDKQNDNLLTMMKDQFANYVIQKVFEICSENQRATLLSRIRLHAHALKKYTYGKHIVARFEQLLGEENQTNGS 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00794 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 591 626 IPR001313 GO:0003723
Gma13g00794 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 663 698 IPR001313 GO:0003723
Gma13g00794 920 CDD Pumilio 586 906 IPR033712 GO:0003723
Gma13g00794 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 735 771 IPR001313 GO:0003723
Gma13g00794 920 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 52 910 - -
Gma13g00794 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 699 734 IPR001313 GO:0003723
Gma13g00794 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 627 662 IPR001313 GO:0003723
Gma13g00794 920 SUPERFAMILY ARM repeat 586 907 IPR016024 -
Gma13g00794 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 844 885 IPR001313 GO:0003723
Gma13g00794 920 SMART pum_5 663 698 IPR001313 GO:0003723
Gma13g00794 920 SMART pum_5 735 771 IPR001313 GO:0003723
Gma13g00794 920 SMART pum_5 627 662 IPR001313 GO:0003723
Gma13g00794 920 SMART pum_5 772 807 IPR001313 GO:0003723
Gma13g00794 920 SMART pum_5 591 626 IPR001313 GO:0003723
Gma13g00794 920 SMART pum_5 850 885 IPR001313 GO:0003723
Gma13g00794 920 SMART pum_5 808 843 IPR001313 GO:0003723
Gma13g00794 920 SMART pum_5 699 734 IPR001313 GO:0003723
Gma13g00794 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 772 807 IPR001313 GO:0003723
Gma13g00794 920 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 571 911 IPR033133 GO:0003723
Gma13g00794 920 Gene3D - 573 917 IPR011989 -
Gma13g00794 920 ProSiteProfiles Pumilio RNA-binding repeat profile. 808 843 IPR001313 GO:0003723
Gma13g00794 920 Pfam Pumilio-family RNA binding repeat 812 845 IPR001313 GO:0003723
Gma13g00794 920 Pfam Pumilio-family RNA binding repeat 634 663 IPR001313 GO:0003723
Gma13g00794 920 Pfam Pumilio-family RNA binding repeat 854 887 IPR001313 GO:0003723
Gma13g00794 920 Pfam Pumilio-family RNA binding repeat 777 809 IPR001313 GO:0003723
Gma13g00794 920 Pfam Pumilio-family RNA binding repeat 710 734 IPR001313 GO:0003723
Gma13g00794 920 Pfam Pumilio-family RNA binding repeat 667 700 IPR001313 GO:0003723
Gma13g00794 920 Pfam Pumilio-family RNA binding repeat 595 629 IPR001313 GO:0003723
Gma13g00794 920 Pfam Pumilio-family RNA binding repeat 739 774 IPR001313 GO:0003723
Gma13g00794 920 MobiDBLite consensus disorder prediction 461 493 - -
Gma13g00794 920 PANTHER PUMILIO HOMOLOG 6, CHLOROPLASTIC 52 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00794 Gma-Chr13 22220227 22228573 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00794 K17943 - gmx:100819166 1701.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00571 17 4734578 4741386 Gma13g00794 13 22220227 22228573 GST
Gma13g00794 13 22220227 22228573 Gma15g01526 15 14278262 14285341 PCT
Gma13g00794 13 22220227 22228573 Gma09g00520 09 5373701 5381879 PCT
Gma15g01526 15 14278262 14285341 Gma13g00794 13 22220227 22228573 PCT
Gma09g00520 09 5373701 5381879 Gma13g00794 13 22220227 22228573 PCT