Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00520 ATGGCAACTGAGAGTCTGATTAGAATCTCGGAAGCTGGGGGTAAATGGCCTTCTCACAAGGAAGCTGCAGCTTTTGGTTCATCGTCTCGTAACATGGCGACGGAGGATTTGGGTATACTTCTGAAGGGCCATAGGTTCCAAGGTGGTGGAAAGGATGCGGCACCCAATCGCAGTGGCAGTGCACCTCCCAGCATTGAAGGCTCATTTCTGGCCATAGAAAACCTTTTACCCCAGCATAACACCGCCCAGAATGCAAGCTTTGCAAATCTAAGCAGCACTACGCAAAATTGCGAGTCTGAAGAACAATTGCGAGCTGATCCAGCTTATTTGGCATATTACAATTCCAATGTCAACCTAAACCCTAGACTTTCTCCCCCGCTTACGTCCTGGGAAAATCGCCATCTAGGACGACATATTGGCAGTTTTAGAAATAATTGGAGAATGTCTTCTGCAGATGATAGCGGTAAAAGTTCTGTACATTTGACTCAAAGGACTCTTTCCACACACAAGGAGGAGTCTGAAGATGATTCAGCCCAACAGCCATATGACGATGAATTAGTTAAGGCAAGTGGAATATGGCGTAGACCTGATGCAACTTCATTGGCATCTCAGCACAAAAATATGGTTGATTTAATTCAGGAAGATTTTCCACGCACCATGTCGCCTGTATATAATAAGTCTCTTTCTGTAAGTCACGGACTAGCGGATAAACCAATTGATTTAGAAGCTGGTTCTAGCTCTTCTCATGGCCCCTCTGTTACTACAATAGAGGCTGGTAAACATACTGTAGGTGCAGATGACATAAGGGTGTCATCAAGTGTTGATACCCATGCCCCAGTTGCAAGCTCATCATCTCTTGAATCCACTGGCAGCATTGGTGTTACTGACTTAGACATTGCAACTGTTGAGTATCAACTAAAGGCTCTTGGTGTATCTAATGCACCAAATTCAGAAAGTCTGAGTTACAAAGAGAAATGGAAGACCGGCTACCAGAACAATTTGATGCAACGCCAGGGATTCCAGCAACAAAACAATCCATATGATGTTCCTAGTGCCAACTCTCAAAATGTAAATTCTGTGTATGCTGGTAGGGAACAATTTCCTTTTAATTCCAACAAGTTCTCCAATGTCCAGCCACTACTGCAGTCATCTGGTTTTACACCTCCCCTATATGCCACAGCAGCTGCTTATATGTCCTCAGCCAATCCATTTTACACTAATATGCAGGCGTCAGGTATATATACTCCACAATATGTTGGCGGATACACTGTAAATCCCACAGCTTTTCCTCCATATGTTACTGCTTATCCTCCTCATGGTGCTGTACCTCTTGTCATTGATGGAGCTACTAGCTCCAGTTATACTCCACTAACACCGGGGGTTTCAATTGGGGGAAACATTTCGCACGGAGCTGAAATGGTACAGACAAACAAGTACCTTGGGCAATTTGGATTTCCTCCGCAGCCTTCTTTTGGTGATCCTATGTACATGCAATATCATCAGCAACCTTTTGTGGAGGGATATGGTATTTCTGGTCATTTTGATCCACTGGCACCTAGAGCAAGTGGTGTTAGCCAAATTAGTCCTTATGATTCGCAAAAAAGGCCCAGTACTGGTGCTTATTTGGATGATAAAAAATTACCTGATCAGAGAACTGCTGCTAATATGACCTCTAGAAGAGGTGGAGTATCAATTCCTAGTTATTTTGGACACATGCCAAACATGGGTTTTGTAATGCAGCATCCGAGTTCACCACTTCCTAGTCCAGTTTTATCTGGATACCCAGAAGGAAGTCCAGGCCTTCCAGGAGTTAGGAATGAAATAAATCTTTCCCCGGCTTCTGGAAGAAATGGAGGCATAATATCTGGATGGCAAGTTCAGAGATCTTTTGACAGTGCTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGCAAAAGTCGAAGATTTGAACTATCTGATATTATTGGACATATTGTTGAATTTAGCTCTGATCAGCATGGGAGTCGATTTATACAGCAGAAGTTGGAAAGTTGTAGTGTCGAAGAGAAGACATTAGTGTTTAAAGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTTTTTGGTAACTACGTAATACAGAAGTTTTTTGAGTATGGAAGCCCAGAGCAGAGGAGAGAACTTGCAGATCGACTTGTTGGCCAGATACTGCCTTTAAGTTTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTAATGAGATGTGTTCGTGATCAAAATGGTAACCATGTTATTCAAAAGTGCATTGAATCTATTCCAACCAAAAAGATTAGCTTTATACTATCTGCATTTCGTGGTCAAGTTGCTACTCTATCGATGCATCCTTATGGATGCCGAGTCATGCAGAGAGTTCTAGAACATTGCACAGACGAGAGTCAATGCCAGTTTATTGTAGATGAAATCTTGGAGTCAGTCTGTGCTCTTGCTCAGGATCAGTATGGTAATTATGTTACGCAGCATGTCTTGGAGAGAGGAAAGCCTCAAGAAAGGAGTCAAATTATCAACAAGTTGTCAGGACATATTGTTCAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAAAAATGTTTGGAGTATGGTGATACCACCGAACGGGAGTTGCTAGTTGCAGAGATATTTGGGCATGATGAAAAATGTGATAATTTATTGACAATGATGAAAGATCAATTTGCGAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAATCAACGAGCAATGTTGCTTTCTCACGTAAGAATTCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGAGAATCAAACACCCAGCTCATGA 2958 0.4185 MATESLIRISEAGGKWPSHKEAAAFGSSSRNMATEDLGILLKGHRFQGGGKDAAPNRSGSAPPSIEGSFLAIENLLPQHNTAQNASFANLSSTTQNCESEEQLRADPAYLAYYNSNVNLNPRLSPPLTSWENRHLGRHIGSFRNNWRMSSADDSGKSSVHLTQRTLSTHKEESEDDSAQQPYDDELVKASGIWRRPDATSLASQHKNMVDLIQEDFPRTMSPVYNKSLSVSHGLADKPIDLEAGSSSSHGPSVTTIEAGKHTVGADDIRVSSSVDTHAPVASSSSLESTGSIGVTDLDIATVEYQLKALGVSNAPNSESLSYKEKWKTGYQNNLMQRQGFQQQNNPYDVPSANSQNVNSVYAGREQFPFNSNKFSNVQPLLQSSGFTPPLYATAAAYMSSANPFYTNMQASGIYTPQYVGGYTVNPTAFPPYVTAYPPHGAVPLVIDGATSSSYTPLTPGVSIGGNISHGAEMVQTNKYLGQFGFPPQPSFGDPMYMQYHQQPFVEGYGISGHFDPLAPRASGVSQISPYDSQKRPSTGAYLDDKKLPDQRTAANMTSRRGGVSIPSYFGHMPNMGFVMQHPSSPLPSPVLSGYPEGSPGLPGVRNEINLSPASGRNGGIISGWQVQRSFDSAHDPKIVNFLEDLKSGKSRRFELSDIIGHIVEFSSDQHGSRFIQQKLESCSVEEKTLVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELADRLVGQILPLSLQMYGCRVIQKALEVIELEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKISFILSAFRGQVATLSMHPYGCRVMQRVLEHCTDESQCQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERSQIINKLSGHIVQLSQHKFASNVVEKCLEYGDTTERELLVAEIFGHDEKCDNLLTMMKDQFANYVVQKVIDICSENQRAMLLSHVRIHAHALKKYTYGKHIVARLEHQFGENQTPSS 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00520 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 765 800 IPR001313 GO:0003723
Gma09g00520 985 SMART pum_5 916 951 IPR001313 GO:0003723
Gma09g00520 985 SMART pum_5 838 873 IPR001313 GO:0003723
Gma09g00520 985 SMART pum_5 729 764 IPR001313 GO:0003723
Gma09g00520 985 SMART pum_5 693 728 IPR001313 GO:0003723
Gma09g00520 985 SMART pum_5 801 837 IPR001313 GO:0003723
Gma09g00520 985 SMART pum_5 765 800 IPR001313 GO:0003723
Gma09g00520 985 SMART pum_5 874 909 IPR001313 GO:0003723
Gma09g00520 985 SMART pum_5 657 692 IPR001313 GO:0003723
Gma09g00520 985 PANTHER PUMILIO HOMOLOG 5 45 978 - -
Gma09g00520 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 693 728 IPR001313 GO:0003723
Gma09g00520 985 MobiDBLite consensus disorder prediction 9 28 - -
Gma09g00520 985 Pfam Pumilio-family RNA binding repeat 661 695 IPR001313 GO:0003723
Gma09g00520 985 Pfam Pumilio-family RNA binding repeat 698 729 IPR001313 GO:0003723
Gma09g00520 985 Pfam Pumilio-family RNA binding repeat 733 766 IPR001313 GO:0003723
Gma09g00520 985 Pfam Pumilio-family RNA binding repeat 843 875 IPR001313 GO:0003723
Gma09g00520 985 Pfam Pumilio-family RNA binding repeat 805 840 IPR001313 GO:0003723
Gma09g00520 985 Pfam Pumilio-family RNA binding repeat 920 952 IPR001313 GO:0003723
Gma09g00520 985 Pfam Pumilio-family RNA binding repeat 878 911 IPR001313 GO:0003723
Gma09g00520 985 Pfam Pumilio-family RNA binding repeat 776 799 IPR001313 GO:0003723
Gma09g00520 985 MobiDBLite consensus disorder prediction 521 544 - -
Gma09g00520 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 838 873 IPR001313 GO:0003723
Gma09g00520 985 SUPERFAMILY ARM repeat 641 974 IPR016024 -
Gma09g00520 985 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 637 977 IPR033133 GO:0003723
Gma09g00520 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 801 837 IPR001313 GO:0003723
Gma09g00520 985 CDD Pumilio 652 973 IPR033712 GO:0003723
Gma09g00520 985 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 978 - -
Gma09g00520 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 657 692 IPR001313 GO:0003723
Gma09g00520 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 910 951 IPR001313 GO:0003723
Gma09g00520 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 729 764 IPR001313 GO:0003723
Gma09g00520 985 ProSiteProfiles Pumilio RNA-binding repeat profile. 874 909 IPR001313 GO:0003723
Gma09g00520 985 Gene3D - 638 982 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00520 Gma-Chr9 5373701 5381879 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00520 K17943 - gmx:100811036 1983.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01526 15 14278262 14285341 Gma09g00520 09 5373701 5381879 GST
Gma17g00571 17 4734578 4741386 Gma09g00520 09 5373701 5381879 PCT
Gma13g00794 13 22220227 22228573 Gma09g00520 09 5373701 5381879 PCT
Gma09g00520 09 5373701 5381879 Gma17g00571 17 4734578 4741386 PCT
Gma09g00520 09 5373701 5381879 Gma13g00794 13 22220227 22228573 PCT