Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00561 ATGCCGCCGGCTCAGATGGAACCGCCATTGCCGGAATCCTCGTCGGTGCCATCTTTTAGCTCCGACGCCGCTTCTCCGGGATCGGCGCCGGAGAGTCGGCGATTCGGGGATCTTAGAGGTTTGCAGTGGCGTATAAATCTTGGGGTGTTACCTTCTTCTTCTTCTTCCATTGATGATCTTCGTCGTGCCACCGCTAATTCTAGAAGGAGGTATGCTAGTTTGAGAGGGCGCCTCCTTGTTGATCCTCATATGCCAAAGGATGGGAGTAGTTCACCCAATCTTGTCATGGACAACCCACTTTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCGCAATGCAGAGATGGAGAAGATGGTTGATCAGGATTTATCACGTTTATACCCAGAACATGGCAACTATTTCCAGACACCAGGATGCCAAGGCATATTGAGACGAATTTTATTACTATGGTGTCTCAGACACCCAGAGTGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCGGTGCTTTATGTTCTCCAATTTGATGTGGGGTGTCTTTCGGAAGTTCGAAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGACCTCTTTTGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAGAAAATCTTCAGACTTGATGGAGGATGAAATCAACTCCAATGGAAATGCAACGAAAATCAAGAGTCTTGATGAGCTTGATCCTAAGATACAGAACATTGTATTGCTAAGTGACGCTTATGGGGCTGAAGGTGAACTGGGTGTGGTTTTATCTGACAAGTTCATTGAACATGATGCTTACTGTATGTTTGATGCTTTAATGAATGGGGCACGTGGTTCAATTGCAATGGCTGATTTCTTCTCTTATTCTCCTTTGCCTGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCATTGTATCATTTGTTGTCTCATGTGGATTCATCTTTGCATGGCCATCTCGTTGATCTCGGGGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTCAGCAACCTCTTGATAATCTGGGATGAAATCTTTTCATCAGATAATAGTAAATTGGAAAAACATGCAGAGGACAATGCAGACTCTGGTTTTAGGATCTTCAATTCGTCTCGCGGAGCATTTATCTCAGCTATGGCTGTAGCAATGATGCTTCATATAAGATCTTCGTTACTTGCAGCTGAAAATCCTACAACCTGTCTCCAGAGATTATTAAACTTCCCTGAGAACATTAACGTTGAAAAACTAATAGAGAAAGCTAAATCCTTGCTGGCTCTTGCATTAAGTACTGAGATTTCATCCTCAATGCCTTTATTGGTCGAGTATCATAACCAGGGTAAATCAGCTATTGCAAGATCTCGCACCCTTTCATCTGAATCAATTTCACCAAAAACTCCTCTGAATTTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTGGTCCACAAGGCTGAAGAACTCAAACAAGATGGAGTAGAAAAACAGGTTCCTACTCGGAAGAAGGGATGGACAGAAAAGGTAAAGTTCAGTTTGAAAAGAACGGAATCTGACCCCTCTTCATCAAGGATTAAGAGTGGTAAAAAGGAATCCAAGTCACCGGTTAGGCGATGTTTGTTAGAAGATCTTTCTAAGGAACTTGGCTTCGAGGAAGATACTGAAAAACTCTCTTGTCATGATGATCTGTCTGCCACAGTTGAAGAGGAGCAAGGGGAAGATGGCTCTGAAGGCAGCAACAACTATTCTCCTGAAGATAGATGTCAAAGTCAAAACACAAGTAGTGAGGAAAACTCACCTGTTATTTCTTGCCCAGCTAGTCCTACCAATGAGACCATTGATCACAAAAATGACTCCGAGAAAAGAAGTGTTGGGTCTAATTTATCCCTGGATATAACTAATGAAACTTCACTTAGTAGTCCCATTGATTCACCTCTTCCAATCTCTGATCATCCTGAGAAAGGACCTCAGACACCAGGGAGAAATAATATTAATAATTCTGCAGGGAATTCAACCACAAATTCTAAGGAGAGAAAATTGAACAAATTCCAGTGGCTATGGAAGTTTGGGCGGAATAATGGCGAGTTTATGTCAGAGAAAGGAGGTGATGCTTATGAGGCTGTAAAACCTgccaacaattgtagcaaccaaagtaacacaacaccctcttctacagccaacaattccaaTGGACATTGTAGTTCTGTTAGTTGCAAAGGGGAATCTACAGATCAGACTGTGATGGGCAGTATGAGGAATATTGGGCAGTCAATGCTTGAGCATATCCAGGTGATTGAGTGTGCTTTCCAACAAGACAGGGGCCAAGAAGCATCATTAGATAACATGTCTAAAATTGTTGTGGTTGGTAAAGCGCAGGTTAATGCCATGTCAGCTCTCAAGGAGCTCCGCAAAATTAGCAATCTTTTGTCTGAGATAAGGCCACACCCGATTGGCTTCCCTTCCTCCCCGGTTCCTCCTTCTGGGTCCCACCTCCTCCTTCCCCTCTCCTTCACACATTCTCCATCCCCTCTCATCCCTTCTTCCTTCAACAAGACGACGAATCTGGGAATGCTATTGCCACCCCACGAGGGACAGAGGTTACTGTGCAACTCAAGGGTTGCAACCTTAACTCAATGA 2697 0.426 MPPAQMEPPLPESSSVPSFSSDAASPGSAPESRRFGDLRGLQWRINLGVLPSSSSSIDDLRRATANSRRRYASLRGRLLVDPHMPKDGSSSPNLVMDNPLSQNPDSTWSRFFRNAEMEKMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPVLYVLQFDVGCLSEVRKLYEDHFTDRFDDLFCQENDLSYSFDFRKSSDLMEDEINSNGNATKIKSLDELDPKIQNIVLLSDAYGAEGELGVVLSDKFIEHDAYCMFDALMNGARGSIAMADFFSYSPLPGSHTGLPPVIEASAALYHLLSHVDSSLHGHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFSSDNSKLEKHAEDNADSGFRIFNSSRGAFISAMAVAMMLHIRSSLLAAENPTTCLQRLLNFPENINVEKLIEKAKSLLALALSTEISSSMPLLVEYHNQGKSAIARSRTLSSESISPKTPLNLVPDSYWEEKWRVVHKAEELKQDGVEKQVPTRKKGWTEKVKFSLKRTESDPSSSRIKSGKKESKSPVRRCLLEDLSKELGFEEDTEKLSCHDDLSATVEEEQGEDGSEGSNNYSPEDRCQSQNTSSEENSPVISCPASPTNETIDHKNDSEKRSVGSNLSLDITNETSLSSPIDSPLPISDHPEKGPQTPGRNNINNSAGNSTTNSKERKLNKFQWLWKFGRNNGEFMSEKGGDAYEAVKPANNCSNQSNTTPSSTANNSNGHCSSVSCKGESTDQTVMGSMRNIGQSMLEHIQVIECAFQQDRGQEASLDNMSKIVVVGKAQVNAMSALKELRKISNLLSEIRPHPIGFPSSPVPPSGSHLLLPLSFTHSPSPLIPSSFNKTTNLGMLLPPHEGQRLLCNSRVATLTQ 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00561 898 MobiDBLite consensus disorder prediction 1 35 - -
Gma17g00561 898 Gene3D - 309 452 - -
Gma17g00561 898 MobiDBLite consensus disorder prediction 596 632 - -
Gma17g00561 898 MobiDBLite consensus disorder prediction 643 664 - -
Gma17g00561 898 MobiDBLite consensus disorder prediction 735 755 - -
Gma17g00561 898 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 101 287 - -
Gma17g00561 898 MobiDBLite consensus disorder prediction 11 27 - -
Gma17g00561 898 Pfam Rab-GTPase-TBC domain 118 179 IPR000195 -
Gma17g00561 898 Pfam Rab-GTPase-TBC domain 269 369 IPR000195 -
Gma17g00561 898 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 330 IPR035969 -
Gma17g00561 898 MobiDBLite consensus disorder prediction 676 697 - -
Gma17g00561 898 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 765 - -
Gma17g00561 898 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 305 444 IPR035969 -
Gma17g00561 898 SMART tbc_4 25 416 IPR000195 -
Gma17g00561 898 MobiDBLite consensus disorder prediction 573 697 - -
Gma17g00561 898 ProSiteProfiles TBC/rab GAP domain profile. 33 370 IPR000195 -
Gma17g00561 898 MobiDBLite consensus disorder prediction 531 552 - -
Gma17g00561 898 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00561 Gma-Chr17 4613750 4621153 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00561 K18469 - gmx:100818700 1542.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00561 17 4613750 4621153 Gma17g00561 17 4613750 4621153 ECH
Gma17g00561 17 4613750 4621153 Gma13g00804 13 22349619 22357430 GST
Gma17g00561 17 4613750 4621153 Gma15g01541 15 14545576 14552041 PCT
Gma17g00561 17 4613750 4621153 Gma09g00536 09 5606345 5611316 PCT
Gma15g01541 15 14545576 14552041 Gma17g00561 17 4613750 4621153 PCT
Gma09g00536 09 5606345 5611316 Gma17g00561 17 4613750 4621153 PCT