Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00804 ATGCCGTCGGCTCTGATGGATCCTCCATTGCCGCAATCCTCGTCGGTGCCGTCTTTAAGCTCCGACGCCACTTCTCCGGGATCGGCGCCGGATAGTCGGCGATTCGGGGATCTTAGAGGTTTGCAGTGGCGTATAAATCTTGGGGTGTTACCATCTTCTTCTTCTTCTTCTTTCATTGATGATCTTCGCCGTGCCACCGCTAATTCTAGAAGGAGGTATGCGAGTTTGAGAGTGCGCCTCCTGGTTGATCCTCATATGCCAAAGGATGGAAGTAGTTCACCCAATCTTGTCATGGACAACCCACTTTCACAAAATCCAGACAGTTCATGGAGTCGCTTTTTTCGCAATGCAGAGATGGAGAGGATGGTTGATCAGGATTTATCACGTTTATACCCCGAACATGGCAACTATTTCCAGACGCCAGGATGCCAAGGCATATTGAGAAGAATTTTATTACTATGGTGTCTCAGACACCCAGAGTGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCGGTGCTTTATGTTCTCCAATTTGATGTTGAGTGTCTTTTGGAAGTTCGAAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGGCCTCTTTTGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAGAAAATCTTCAGACTTGATGGAGGATGAAATTGACTCCTATGAAAATCTAACGAAAATCAAGAGTCTTGATGAGCTTGATCCTAAGATACAGAACATTGTATTGCTAAGTGACGCTTATGGGGCTGAAGGTGAACTGGGTGTTGTTTTATCTGAGAAATTCATCGAACATGATGCTTACTGTATGTTTGATGCTTTAATGAATGGGGCACGTGGTTCAATTGCAATGGCTGATTTCTTCTCTTATTCCCCTTTGCCTGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCGTTGTATCATTTGTTGTCTCATGTGGATTCATTTTTGCATGGCCATCTCGTTGATCTCGGGGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTCAGCAACCTCTTGATAATCTGGGATGAAATCTTTTCATCAGATAATAGTAAAGTGGAAAAACATGCCCAGGACAATGCAGACTCAGGTTTTAGGATCTTCAATTCGTCTCGCGGAGCATTTATCTCAGCTATGGCTGTAGCAATGATGCTTCATATAAGATCTTCGCTGCTTGCAGCTGAAAATCCTACAACCTGTCTCCAGAGATTATTAAACTTCCCTGAGAACACTAACGTTGAAAAACTAATAGAGAAAGCTAAATCCTTGCAGGCTCTTGCATTAAGTACTGAGATTTTATCCTCAATGCCTTCATTTGTCGAGTGTCATACCAAGGGTAAATCAGCTATTGCAAGATCTCGCACCCTTTCATCTGAATCAATTTCACCAAAAACTCCTCTGACTTTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGTCCACAAGGCTGAAGAACTCAAACAAGATGGAGTAGAAAAACAGGTTCCTACTTGGAAGAAGGGATGGACAGAAAAGGTAAAGCTCAGTTTGAAAAGAACAGAATCTGACCCCTCTTCATCAAGGACTAAGAGTGGTAAAAAGGAATCCAAGTTGCCGGTTAGGCGATGTTTGTTAGTAGATCTTTCTAAGGAACTTGGCTTTGAGGAAGATACTGAAAAACTCTGTTGTCATGATAATCTGTCTGCAACGGTTGAAGAGGAGCAACGGGAAGATGGCTCCGAAGGCAGCAACAACTATTCTCCTGAAGATAGATGTCTAAGTCAAAACACAAGTAGTGAGGAAAACTCACCTGTTATTTCTTGCCCAGCTAGTCCTCCTAATGAGGCCAATGATCACAAAGATGACTCCCAGAAAAGTAGTGTTGGGTCTAATTTATCCCTTGATATAATAAATGAAACTTCACTTAGTAGTAGTCCCATTGATTCACCTCTTCCAATCTCTGATCATCCTGAGAACGGACCTCAGACACCAGGGAGAAATAATATTAATAATTCCGCTGGAAATTCAACCACAAATTCTGAGAGAAAATTGAACAAATTCCAGTGGCTATGGAAGTTTGGCCGGAATAATGGCGAGTTTATGTCAGAGAAAGGAGGTGATACTTCTGAGGCTGCAAAACCTgccaacaattgtaacaatcaaagtaacacaacaccctcttctacagccaacaattgtaataatcatagtaacacaataccctcttctacagccaaaaattgtaataatcaaagtaacataataccctcttctacagccaacGGACACCGTAGATCTGTTAGTTGCCAAGGGGAATCTACTGACCAGAATGTGATGGGCACTATCAGGAATATTGGACAGTCAATGCTTGAGCATATCCGGGTGATTGAGTGTGCTTTCCAACAAGACCGGGGCCAAGGAGCATCATTAGATAACATGTCTAAAAATGCTGTGGTTGGTAAAGGGCAGGTTAATGCCGTGTCAGCTCTCAAGGAGCTCCGCAAAATTAGCAATCTTTTGTCTGAGATGTGA 2586 0.4064 MPSALMDPPLPQSSSVPSLSSDATSPGSAPDSRRFGDLRGLQWRINLGVLPSSSSSSFIDDLRRATANSRRRYASLRVRLLVDPHMPKDGSSSPNLVMDNPLSQNPDSSWSRFFRNAEMERMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPVLYVLQFDVECLLEVRKLYEDHFTDRFDGLFCQENDLSYSFDFRKSSDLMEDEIDSYENLTKIKSLDELDPKIQNIVLLSDAYGAEGELGVVLSEKFIEHDAYCMFDALMNGARGSIAMADFFSYSPLPGSHTGLPPVIEASAALYHLLSHVDSFLHGHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFSSDNSKVEKHAQDNADSGFRIFNSSRGAFISAMAVAMMLHIRSSLLAAENPTTCLQRLLNFPENTNVEKLIEKAKSLQALALSTEILSSMPSFVECHTKGKSAIARSRTLSSESISPKTPLTLVPDSYWEEKWRVVHKAEELKQDGVEKQVPTWKKGWTEKVKLSLKRTESDPSSSRTKSGKKESKLPVRRCLLVDLSKELGFEEDTEKLCCHDNLSATVEEEQREDGSEGSNNYSPEDRCLSQNTSSEENSPVISCPASPPNEANDHKDDSQKSSVGSNLSLDIINETSLSSSPIDSPLPISDHPENGPQTPGRNNINNSAGNSTTNSERKLNKFQWLWKFGRNNGEFMSEKGGDTSEAAKPANNCNNQSNTTPSSTANNCNNHSNTIPSSTAKNCNNQSNIIPSSTANGHRRSVSCQGESTDQNVMGTIRNIGQSMLEHIRVIECAFQQDRGQGASLDNMSKNAVVGKGQVNAVSALKELRKISNLLSEM 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00804 861 MobiDBLite consensus disorder prediction 1 35 - -
Gma13g00804 861 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 307 447 IPR035969 -
Gma13g00804 861 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 793 - -
Gma13g00804 861 Pfam Rab-GTPase-TBC domain 272 371 IPR000195 -
Gma13g00804 861 Pfam Rab-GTPase-TBC domain 120 200 IPR000195 -
Gma13g00804 861 Gene3D - 311 454 - -
Gma13g00804 861 MobiDBLite consensus disorder prediction 590 647 - -
Gma13g00804 861 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 103 288 - -
Gma13g00804 861 MobiDBLite consensus disorder prediction 678 700 - -
Gma13g00804 861 MobiDBLite consensus disorder prediction 603 628 - -
Gma13g00804 861 SMART tbc_4 25 418 IPR000195 -
Gma13g00804 861 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 296 IPR035969 -
Gma13g00804 861 MobiDBLite consensus disorder prediction 722 790 - -
Gma13g00804 861 MobiDBLite consensus disorder prediction 730 790 - -
Gma13g00804 861 MobiDBLite consensus disorder prediction 659 700 - -
Gma13g00804 861 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 793 - -
Gma13g00804 861 MobiDBLite consensus disorder prediction 8 28 - -
Gma13g00804 861 ProSiteProfiles TBC/rab GAP domain profile. 33 372 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00804 Gma-Chr13 22349619 22357430 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00804 K18469 - gmx:100816501 1696.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00804 13 22349619 22357430 Gma13g00804 13 22349619 22357430 ECH
Gma17g00561 17 4613750 4621153 Gma13g00804 13 22349619 22357430 GST
Gma13g00804 13 22349619 22357430 Gma15g01541 15 14545576 14552041 PCT
Gma13g00804 13 22349619 22357430 Gma09g00536 09 5606345 5611316 PCT
Gma15g01541 15 14545576 14552041 Gma13g00804 13 22349619 22357430 PCT
Gma09g00536 09 5606345 5611316 Gma13g00804 13 22349619 22357430 PCT