Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01541 ATGCCGCCGGCGCTGTCGGATCCGCTGTCGGTGACTCCGGCGAGCTCCGACGCTGTTTTGCAGCGATCGGCGCCGGAGAATCGGCGATTCGGTGATCTTAGAGGGCTGCAGTGGCGGATAAATCTTGGGGTGTTGCCGTCTTCGTCTTCGACTTCAATTGATGATCTTCGTCGAGTCACCGCTAATTGTAGAAGAAGGTATGCTAGCTTGAGAAGGCGCCTACTGGTTGAACCACATGTTCCAAAGGATGGAACTAATTCACCCAATCTTGTCATTGACAATCCACTTTCACAGAATCCAGATAGTACGTGGGGTCGCTTTTTCCGCAATGCCGAGCTGGAGAGAATGGTTGATCAGGATTTATCACGTTTATACCCAGAACATGGCAGTTATTTTCAGACTCCAGGATGCCAAAGCATGTTGAGACGAATTTTATTACTGTGGTGTCTTAGGCACCCAGAATGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCTCTGCTTTATGTTCTCCAAGTTGATTTGGAGCATCTTTTGGAAGTTCGGAAGCTTTACGAAGATCACTTTACTGACAGATTCGATGGCCTTTTATGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAAAAAATCTCCAGAATTGATGGAGGATGAATTTGGTTCTCATGGAAATTCTGTGAAAGGCAACAGTCTTGAGGAACTTGATCCTGAGATACAGACCATTGTATTACTAAGTGACGCTTATGGAGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCGTGGAGCATGATGCTTACTGTATGTTTGATGCTTTGATGAGTGGGGCCCATGGTTCAGTTGCAATGGCTGATTTCTTCTCTTCGTCCCCTGTATCTGGGTCCCATAGTGGCCTGCCTCCTGTTATTGAGGCTTCTACTGCATTGTATTATTTGTTGTCTCTTGTAGATTCATCTCTCCATACCCATCTTTTTGAACTTGGGGTTGAGCCCCAGTACTTTTCTCTTCGATGGTTGCGAGTTTTATTTGGACGAGAATTTTCACTTGCCAACCTCTTGATCATATGGGATGAGATCTTTGCATCGGAGAATAGCAGCATGGGAAAAGGTGCTGATGACTGTGAGTTCAGGATCTTAAACTCACCTCGTGGAGCATTTATCTCAGCTATGGCAGTAGCTATGTTACTTCATTTAAGATCTTCACTACTTGCAACTGAAAACCCTACAAGGTGTCTTCAGAGATTATTAAACTTCCCTGAAGACATTAATATTGAAAAACTACTAGAGAAGGCTAAATCCTTGCAGGCTTTTGCACTGAGTGTGGATATTTCATCCTCATCACTTTTGTTTCTTGGGTCTCATTACCAAAGTAAATCTATGTATACTACATCTGTGACCCTTCCATCTGAATCTGTGTCTCCGAAAACTCCTCTGAATTTGTTACCTGATAGCTATTGGGAAGAAAAGTGGAGGGTTGCCCACAAGGCTGAAGAACTCAGGCAAGATAGTCTAGAAAAACAGGTTCCCACTCGGAAAAAGGGATGGACAGAAAAGGTAAAATTCAGTTTGAGAAGAGCAAAATCTGACCCTCCTTTGTCAAGGATTCAGAGTGGCAGAAATTTTAGGCGCAGTTTGTTGGAAGATCTTCGCAAGGCACTTGGCTCAGAGGAAGATGCTGAGAAAATGCAGCCCGATGAAACACTACGCCAGCATGATAATCCTTCTGAAGCAGTTGAAGTAAAAGAAGATAATGGCTGTAGTGGTGACAACAATTACTTGTCTGATGATAGATCTCCAAGTGGAAATTCTGGCAGTGAGGAAGACTTGTCTATATATTCTGAGCCAACTAGTCCCCCTAATGAGGCCAATGATCATGAAATTACCTCAGTGAAAAGTAGTGTTGCATCTAATTCACCCCTAGACGAATGCAATGAAACTTCAGGTACCAGTTCCTCATttccaatctccaatcttccagagaacatttctcagacatcacagtgcaatacagaaaattctgaatgcaacgaaactttgcataccagtcccaatgatccaccccttccaatctccgatcctcctgagaacatttctcagacatcacggtgcaatacagaaaattctgaatgcaatgaaacatcagatacccgtcccagtgatctgccccttccaatctccgatcctccgaagaacatACCTCCAACATCAGGGAGCAAGAACGATGAAGCAGGAAATACAGCCACTCTTCCTAAAGACAAAAAACAGAATAAGTTGCAGTGGTTTTGGCCGTTTGGACGGAATAATGCTGAGGCAATCTCTGAGAAAGCAGGAGGTGCTGCAGAAGCTGCCAACCGCGATAGCACTCAAAACAATACTCCACAACCAGCCTCATCTGTAGCTAATGAGCCTTGTAGTTCTGTTAGTTGCAGTGGGGAATCTGTTGACAAGAATGTGATGGGCACTTTGAAGAATATTGGGCAGTCTATGCTAGACCATATTCAGGTAATTGAATCTGTTTTCCAACAAGACCGCAAAGGGCAAGTTACTGCCATGACAGCTCTCAAAGAGCTTAGGAAAATTAGCAATATTCTGTCTGAGATGTGA 2613 0.3957 MPPALSDPLSVTPASSDAVLQRSAPENRRFGDLRGLQWRINLGVLPSSSSTSIDDLRRVTANCRRRYASLRRRLLVEPHVPKDGTNSPNLVIDNPLSQNPDSTWGRFFRNAELERMVDQDLSRLYPEHGSYFQTPGCQSMLRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDLEHLLEVRKLYEDHFTDRFDGLLCQENDLSYSFDFKKSPELMEDEFGSHGNSVKGNSLEELDPEIQTIVLLSDAYGAEGELGIVLSEKFVEHDAYCMFDALMSGAHGSVAMADFFSSSPVSGSHSGLPPVIEASTALYYLLSLVDSSLHTHLFELGVEPQYFSLRWLRVLFGREFSLANLLIIWDEIFASENSSMGKGADDCEFRILNSPRGAFISAMAVAMLLHLRSSLLATENPTRCLQRLLNFPEDINIEKLLEKAKSLQAFALSVDISSSSLLFLGSHYQSKSMYTTSVTLPSESVSPKTPLNLLPDSYWEEKWRVAHKAEELRQDSLEKQVPTRKKGWTEKVKFSLRRAKSDPPLSRIQSGRNFRRSLLEDLRKALGSEEDAEKMQPDETLRQHDNPSEAVEVKEDNGCSGDNNYLSDDRSPSGNSGSEEDLSIYSEPTSPPNEANDHEITSVKSSVASNSPLDECNETSGTSSSFPISNLPENISQTSQCNTENSECNETLHTSPNDPPLPISDPPENISQTSRCNTENSECNETSDTRPSDLPLPISDPPKNIPPTSGSKNDEAGNTATLPKDKKQNKLQWFWPFGRNNAEAISEKAGGAAEAANRDSTQNNTPQPASSVANEPCSSVSCSGESVDKNVMGTLKNIGQSMLDHIQVIESVFQQDRKGQVTAMTALKELRKISNILSEM 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01541 870 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 9 522 - -
Gma15g01541 870 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 739 808 - -
Gma15g01541 870 MobiDBLite consensus disorder prediction 1 20 - -
Gma15g01541 870 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 101 283 - -
Gma15g01541 870 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 302 438 IPR035969 -
Gma15g01541 870 MobiDBLite consensus disorder prediction 735 756 - -
Gma15g01541 870 MobiDBLite consensus disorder prediction 786 807 - -
Gma15g01541 870 MobiDBLite consensus disorder prediction 590 688 - -
Gma15g01541 870 ProSiteProfiles TBC/rab GAP domain profile. 28 366 IPR000195 -
Gma15g01541 870 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 32 326 IPR035969 -
Gma15g01541 870 MobiDBLite consensus disorder prediction 558 759 - -
Gma15g01541 870 SMART tbc_4 25 409 IPR000195 -
Gma15g01541 870 MobiDBLite consensus disorder prediction 697 723 - -
Gma15g01541 870 MobiDBLite consensus disorder prediction 778 807 - -
Gma15g01541 870 Gene3D - 305 444 - -
Gma15g01541 870 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 9 522 - -
Gma15g01541 870 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 739 808 - -
Gma15g01541 870 Pfam Rab-GTPase-TBC domain 114 175 IPR000195 -
Gma15g01541 870 Pfam Rab-GTPase-TBC domain 265 367 IPR000195 -
Gma15g01541 870 MobiDBLite consensus disorder prediction 558 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01541 Gma-Chr15 14545576 14552041 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01541 K18469 - gmx:100812967 1707.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01541 15 14545576 14552041 Gma15g01541 15 14545576 14552041 ECH
Gma15g01541 15 14545576 14552041 Gma09g00536 09 5606345 5611316 GST
Gma17g00561 17 4613750 4621153 Gma15g01541 15 14545576 14552041 PCT
Gma13g00804 13 22349619 22357430 Gma15g01541 15 14545576 14552041 PCT
Gma15g01541 15 14545576 14552041 Gma17g00561 17 4613750 4621153 PCT
Gma15g01541 15 14545576 14552041 Gma13g00804 13 22349619 22357430 PCT