Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00550 ATGCGCTCAGGAGTTTGTACATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGGAGGAGGGGCCATGCACAGGTCACTCCACTGCATGTGGCTGCCACTTTGCTAAGCTTAAGAGGAAGTTCCTTGAGAAGGGCTTGTCTGAAGTCATCTCAAGCTTCTCATCATCCTCTTCAATGCAGGGCTCTTGAGTTGTGCTTCAATGTTGCCCTCAACAGGCTCCCAACAACACCTTCTCCTTTGATCCACACTCAGCCTTCTCTCTCCAATGCTCTCATTGCTGCATTGAAGAGAGCTCAGGCTCACCAGAGAAGGGGATGCATTGAGCAACAGCAACAACAGCCTCTTCTCACCATCAAGGTTGAGCTTGAACACCTCATCATATCAATCCTTGATGACCCTAGTGTTAGCAGGGTCATGAGAGAGGCTGGTTTCTCCAGCACTGCTGTTAAGAACCACATAGAGGACTCTAATTCACCTCAATATTCTGTTTTCCAGTGTTACAATAGCTCGGGTGGTGTGTTCTCTTCTCCTTGTTCACCTTCTGCCAGTGAGAACAACAACCATAGGGAAACAGCCACCAACAACAACCCTACCAATTTCAGGCACACTACTCGTCATTTCTTAACTTCTTACGCTTCTGAGTTCCACCCTTCACTTGTCTTTTCTCCACCAAAGAATGCACCAGTGTGTTCCATCACTGGTGCAGCTTCTTCTTCTAGTAAGGATGATGATGTCAGGCTTGTTCTGGATATCCTCTTGAGGAAGAAGAAAAAGAACACCGTGATTGTTGGTGACTCACTGTCATTAACTGAAGGCCTTGTGGGAGAGATAATGGGAAGGCTTGAAAGGTCGGAAGTGCCTGATGAGttaaagtcaattcattttatcaaattccaaatttcacatgtttctttgagttgcatgaagagagatgaagttgaaatgaaactcttggagctggaaagaaaggtgaattccattgcttcaggaggagggggtggcattttttatattggagacctgaagtggacagtggaggaggcaagtttaagtgaaaaagaggaagggtccccaaatggagaagtttctggttataatcctgttgatcatttagtttcagaaataggaaagttattctGTGACTGTGGAACCTCAAATAATGCTAAGGTGTGGCTCATGGCCACTGCTAGCTATCAAACATACATGAGGTGTCAAATGAGGCAACCCCCTCTTGAGAAGCAATGGGCTCTTCAGGCTGTTCCTGTTCCATCAGGTGGACTGGGCTTGAGTCTTCATGCTCCCAGTGTCCTTGATTCAAAGATGACCATCTCGCATAACCAATCTCAAGTGCTGGAAACAAAGCCCTTTGGTAATATGGAGCAGGAGGATAAACTCAATTGTTGTGAAGAATGTGCCTCCAATTATGAAAAAGAAGCCCAATTTATCAGGCCAGACCAAAAGAAAAGGTTGCCTTTCTGGCTTCAGTCTCATATCACAGAAGACCATAAGAAGGATGAATTAGTCCAATTGAAAAGAAAATGGAATAGACTATGCCACTGTCTCCACCAAAGCAAACAGCCTCAGAACCAATGGAACTGGAACCACAACAGTTATAATTCACCAAGCTCCATATCCTTTGCCAGCAATGCCACACATGGCTCCACTTCCAAACTCGTCCCTCGATTCCGACGCCAACAATCATGCATCATTGAATTCAATTTCGGCAAGAAAAGAGAAGCAACAGAGCCAGTCTTGGATTCCCTTGAGAGCATGGAAGGTAAAGAAGTAAAGACTACTCTTGCTCTTGGCAATGGAGGTTCAGGTGAGTCGGCGGTGGGGGATATAACTGATACAACACTGCAACGAGCTCATATTTGTAAACTATTGCAGGAGAATGTGCCATGGCAGTCTGAAACTTTTCCTTCAATAGCAGAAGCCTTGATTGATTCCAAATCAGCAAAGGAAAGTAACAACATTACTTGGTTACTTATGCAAGGCAATGACACCATTGGGAAAAGAAGGTTGGCACTTGCAATTGCAGAATCAGTTTTTGGCTCAACTAATCTGCTCCTTCAATTTGACATGCTAAAGAGAGAGACATCAATAGCCCCATTTTCTGAAATGCTGGAAGGAGCACTGAAAACACATCACCAGCTTGTGATGCTAATAGAAAATGTTGACTTTGCTGATGCCCAGTTCAAGAAATTCCTCTGTGATGGATTCGAAACAGGAAACTTTGGAAATTTCACTGAAGAGAACTCAAGCCAAGTAATATTCATATTGACAAATGGTGGAAGTGGATCCACTAACATTGAGCAGCAGAATGAGGACTCGGTTATGAGGTTGTTGTGGCAAGTCAGTGAAACCAAGCCTAACTTGGAGACGCCATCTGTCACAACCACGATCGCGGAGCCATGTTTTGGCCACAAAAGAAGAGCTGAACTTGATATGTTTTCTAACACCAACAGTTTTCAAGGGAGCAAGAAGAAAGAGTTTTCAAGACAAACAAGCTTTAACACTCTTGATCTGAACATGAAAGCTGATGAAGGGGATAAAGCAGGAGAAAGTAGCCCCATTTCAAGTGATCAGACCGGAGAAACTATAGCTGATCCACTGAACCAAAACGGATTTCTTGACTCAATTGTGAACCGGTTTGAGTTCAACACAAATCCAGTTAAGGACAGAGAGATGGCAGAGTTGTTTTTGTGTAAGTTCAAAGAGTCTTTTGAAGAGGTTTATGGGAAGAAATGTTTGGAGAATCTAAGTGTAGATGAGAGGGTGATTGAGGATGTGGGTGTTGGGTGTGGTTATTTTACCAACAGCTTGTTTGAGAAATGGCTGAAAGACGTTTTTCAAAGCAGTTTAGAAACGGTTAACTTTGGAGGGAAGGAGGGTATACTTTTTAGACTTTCTTGGGGTGGTAAAGGAGATAGAAAATCGGATAGTGGGTTCATGAGTTCTTCTTTGCCCAAGAGTATCCAAGTTAATTACTTCATAGAGTGA 3033 0.4026 MRSGVCTLQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRGSSLRRACLKSSQASHHPLQCRALELCFNVALNRLPTTPSPLIHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEHLIISILDDPSVSRVMREAGFSSTAVKNHIEDSNSPQYSVFQCYNSSGGVFSSPCSPSASENNNHRETATNNNPTNFRHTTRHFLTSYASEFHPSLVFSPPKNAPVCSITGAASSSSKDDDVRLVLDILLRKKKKNTVIVGDSLSLTEGLVGEIMGRLERSEVPDELKSIHFIKFQISHVSLSCMKRDEVEMKLLELERKVNSIASGGGGGIFYIGDLKWTVEEASLSEKEEGSPNGEVSGYNPVDHLVSEIGKLFCDCGTSNNAKVWLMATASYQTYMRCQMRQPPLEKQWALQAVPVPSGGLGLSLHAPSVLDSKMTISHNQSQVLETKPFGNMEQEDKLNCCEECASNYEKEAQFIRPDQKKRLPFWLQSHITEDHKKDELVQLKRKWNRLCHCLHQSKQPQNQWNWNHNSYNSPSSISFASNATHGSTSKLVPRFRRQQSCIIEFNFGKKREATEPVLDSLESMEGKEVKTTLALGNGGSGESAVGDITDTTLQRAHICKLLQENVPWQSETFPSIAEALIDSKSAKESNNITWLLMQGNDTIGKRRLALAIAESVFGSTNLLLQFDMLKRETSIAPFSEMLEGALKTHHQLVMLIENVDFADAQFKKFLCDGFETGNFGNFTEENSSQVIFILTNGGSGSTNIEQQNEDSVMRLLWQVSETKPNLETPSVTTTIAEPCFGHKRRAELDMFSNTNSFQGSKKKEFSRQTSFNTLDLNMKADEGDKAGESSPISSDQTGETIADPLNQNGFLDSIVNRFEFNTNPVKDREMAELFLCKFKESFEEVYGKKCLENLSVDERVIEDVGVGCGYFTNSLFEKWLKDVFQSSLETVNFGGKEGILFRLSWGGKGDRKSDSGFMSSSLPKSIQVNYFIE 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00550 1010 Gene3D - 621 818 IPR027417 -
Gma17g00550 1010 PANTHER PROTEIN SMAX1-LIKE 5 1 974 - -
Gma17g00550 1010 MobiDBLite consensus disorder prediction 187 210 - -
Gma17g00550 1010 Pfam Clp amino terminal domain, pathogenicity island component 26 53 IPR004176 -
Gma17g00550 1010 Pfam Clp amino terminal domain, pathogenicity island component 130 165 IPR004176 -
Gma17g00550 1010 Gene3D - 9 169 IPR036628 -
Gma17g00550 1010 SUPERFAMILY Double Clp-N motif 12 164 IPR036628 -
Gma17g00550 1010 ProSiteProfiles Clp repeat (R) domain profile. 8 169 IPR004176 -
Gma17g00550 1010 MobiDBLite consensus disorder prediction 857 878 - -
Gma17g00550 1010 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 974 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00550 Gma-Chr17 4524644 4528424 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00550 - - gmx:100816045 1991.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00550 17 4524644 4528424 Gma17g00550 17 4524644 4528424 ECH
Gma17g00550 17 4524644 4528424 Gma13g00815 13 22443976 22447798 GST
Gma17g00550 17 4524644 4528424 Gma15g01555 15 14834194 14838562 PCT
Gma17g00550 17 4524644 4528424 Gma09g00549 09 5789871 5794187 PCT
Gma15g01555 15 14834194 14838562 Gma17g00550 17 4524644 4528424 PCT
Gma09g00549 09 5789871 5794187 Gma17g00550 17 4524644 4528424 PCT