Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00815 ATGCGCTCAGGAGTTTGTGCATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGGAGGAGGGGCCATGCACAGCTCACTCCTCTGCATGTGGCTGCCACTTTGCTAAGCCTTAGAGGCAGTTCCTTGAGAAGGGCTTGCCTCAAGTCTCAGCCTCACCAAACTTCTCATCATCCTCTTCAATGCAGGGCCCTTGAGTTGTGCTTCAATGTTGCCCTCAACAGGCTCCAAACAACACCTTCTcctttgatccacactcagccttctctctccaatgctctcattgctgcattgaagagagctcaggctcaccagagaaggggctgcattgagcaccagcagcaacagcctctgctcaccatcaaggttgagctggaacacctcatcatatcaatccttgatgaccctagtgttagcagggttatgagagaggctggcttctccagcactgctgttaagaacaacatagagGACTCTTCACCTCATTCTGTTTTCCAGTGTTACAATAGTTCTGGTGGTGTGTTCTCTTCTCCTTGTTCACCTTCTGCCAGTGAGAACAACAACCATAGGGAAACAGCCACCAACCCTACCAATTTCAGACACCCTCATCATTACTTAACTTCTTATGCATCTTCTGAGTTCCACCCTTCACTTCTGTTTTCTCCACCAAAGAATAATTCACCAGTGTGTTCCATCACTGGTGCAGCTTCTTCTAGTAAGGATGATGTCAGGCTTGTTCTGGATATCCTCTTGAGGAAGAAGAAAAAGAACACCGTGATTGTTGGTGACTCACTGTCATTAACTGAAGGCCTTGTGGCAGAGCTAATGGGGAGGCTAGAAAGGTCAGAAGTGCCTGATGAGTTAAAGTCAACCCATTTTATCAAATTCCAAATTTCACATGATTCATTGAGTTGCATGAAGAGAGATGAAGTTGAAATGAAACTCTTGGAACTCAAAAGGAAGGTGGAATCCATTGCTTCAGGAGGAGGAGGGGGTGGCATTTTTTATATTGGAGACCTGAAGTGGACAGTGAAGGAGGCAAGTTTCAGTGAGAAAGAGGAAGGATCCCCAAATGGAGAAGTTTCTGGTTATAACCCTGTTGATCATCTTGTTTCAGAAATAGGGAAGTTATTCTCTGATTGTGGAACCTCAAATAATGCTAAGGTGTGGCTCATGGCCACTGCTAGCTATCAAACATACATGAGGTGTCAAATGAGGCAACCCCCTCTTGAGAAGCAATGGGCTCTTCAGGCTGTTCCTATTCCATCAGGTGGACTTGGCTTGAGTCTTCATGCTCCCAGTGTCCTTCATTCAAAGATGATTGTCTCGCATAACCAATCTCATGTGCCGGAAACAAATCCCTTTGGTAACATGGAGCAGGAGAATAAGCTCAATTGTTGTGAGGAATGTGCCTCCAATTATGAAAAAGAAGCCCAATTTCTCAGGCCCGACCAAAAGAAAATGTTGCCTCTCTGGCTTCAGTCTCATAGCACAGAAGACTCTAAGAAGGATGAATTAGTCCAATTGAAAAGAAAATGGAATAGACTATGCCACTGTCTCCACCAAAGCAAACAGCCTCAGAACCAATGGAGCTGGAACCACAACAGTTATAATTCACCAAGCTCTATATCCTTTGCCAACAATGCCACACATGGCTCCACTTCCAAACTTGTCCCTCGATTCCAGCGCCAACAATTATGCATCATTGAGTTCAATTTCGGCAACAAAAGGGAAGCAACAGAGCCAGTCTTGGATTCCCTTGAGAGCATGGACGGTAAAAAAGTAAAGACTATTCTTGCTCTTGGCAATGGTGGTTCAGGAGAATGCAATGACACCATTGGGAAAAGAAGGTTGGCACTTGCAATTGCAGAATCAGTTTTTGGCTCAACTGATGTACTCCTTCACTTTGACATGCTAAAGAGAGAGACTTCAATAGCCCCATTTTCTGAAATGCTGGAAGGAGCACTGAAGACACACCACCAGCTTGTGATTCTAATAGAAAATGTTGACTTTGCTGATGCCCAGTTCAAGAAATTCCTCTCAGATGGATTTGAAAAGGGAAAGTTTGGAAATTTCACAGAAGAGAACTCAAGCCAAGTAATATTCATATTGACAAATGGTGGATGTGGATCCACTAGCAATGAAGAGCAGAATGATAACTTGGTTATGAGGTTGTTGTGGCAGGTCAGTGAAACCAAGCCTAACTCAGAGACGCCATCTGTGGCAACCAGGATCGCGGAGCCTTGTTTAGGCCACAAGAGAAGAGCTGAACTTGATTTGTTTTCTAACACCAACAGTTCTCAAGGGAGCAAGAAGAAACAGTTTTCAAGACAAACAAGCTTTAACACTCTTGATCTGAACATGAAAGCTGATGAAGAGGATAAAGCAGGAGAGAGTAGCCCCATTTCAAGTGATTTGACTGGAGAAACTATAGCTGATCCGTTGAACCAAAATGGGTTTCTTGACTCAAATGTGAACCGGTTTGAGTTTAACACAAATCCAGTTAAGGACAGAGAGATGGCAGAGTTGTTTCTGTGTAAGTTCAAAGGGTCTTTTGAGGAGGTTTGTGGGAAGCAATGTTGGGAGAATTTAAGTGTAGATGAGAGGGTGATTGAGGATGTGAGTGTTGGGTGTGGTTATTTTACCAACAGCTTGTTTGAGAAATGGCTGAAAGACGTTTTTCAAAGCAGTTTAGAAACAGTTAACTTTGGAGGGAAGGAGGGTATACTTTTAAGACTTTCTTGGGAGGGTAAAGGAGATAGAAAATCGGATAGTGGGTTCATGAGTTCTTCTCTGCCCAAGAGTATCCAAGTTAATTACTTCATAGAGTGA 2859 0.4022 MRSGVCALQQTLTAEAASVLKHSLGLARRRGHAQLTPLHVAATLLSLRGSSLRRACLKSQPHQTSHHPLQCRALELCFNVALNRLQTTPSPLIHTQPSLSNALIAALKRAQAHQRRGCIEHQQQQPLLTIKVELEHLIISILDDPSVSRVMREAGFSSTAVKNNIEDSSPHSVFQCYNSSGGVFSSPCSPSASENNNHRETATNPTNFRHPHHYLTSYASSEFHPSLLFSPPKNNSPVCSITGAASSSKDDVRLVLDILLRKKKKNTVIVGDSLSLTEGLVAELMGRLERSEVPDELKSTHFIKFQISHDSLSCMKRDEVEMKLLELKRKVESIASGGGGGGIFYIGDLKWTVKEASFSEKEEGSPNGEVSGYNPVDHLVSEIGKLFSDCGTSNNAKVWLMATASYQTYMRCQMRQPPLEKQWALQAVPIPSGGLGLSLHAPSVLHSKMIVSHNQSHVPETNPFGNMEQENKLNCCEECASNYEKEAQFLRPDQKKMLPLWLQSHSTEDSKKDELVQLKRKWNRLCHCLHQSKQPQNQWSWNHNSYNSPSSISFANNATHGSTSKLVPRFQRQQLCIIEFNFGNKREATEPVLDSLESMDGKKVKTILALGNGGSGECNDTIGKRRLALAIAESVFGSTDVLLHFDMLKRETSIAPFSEMLEGALKTHHQLVILIENVDFADAQFKKFLSDGFEKGKFGNFTEENSSQVIFILTNGGCGSTSNEEQNDNLVMRLLWQVSETKPNSETPSVATRIAEPCLGHKRRAELDLFSNTNSSQGSKKKQFSRQTSFNTLDLNMKADEEDKAGESSPISSDLTGETIADPLNQNGFLDSNVNRFEFNTNPVKDREMAELFLCKFKGSFEEVCGKQCWENLSVDERVIEDVSVGCGYFTNSLFEKWLKDVFQSSLETVNFGGKEGILLRLSWEGKGDRKSDSGFMSSSLPKSIQVNYFIE 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00815 952 SUPERFAMILY Double Clp-N motif 12 166 IPR036628 -
Gma13g00815 952 Pfam Clp amino terminal domain, pathogenicity island component 132 167 IPR004176 -
Gma13g00815 952 Pfam Clp amino terminal domain, pathogenicity island component 26 53 IPR004176 -
Gma13g00815 952 PANTHER PROTEIN SMAX1-LIKE 5 619 916 - -
Gma13g00815 952 PANTHER PROTEIN SMAX1-LIKE 5 1 612 - -
Gma13g00815 952 Coils Coil 466 486 - -
Gma13g00815 952 ProSiteProfiles Clp repeat (R) domain profile. 8 171 IPR004176 -
Gma13g00815 952 MobiDBLite consensus disorder prediction 188 208 - -
Gma13g00815 952 Gene3D - 9 169 IPR036628 -
Gma13g00815 952 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 619 916 - -
Gma13g00815 952 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00815 Gma-Chr13 22443976 22447798 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00815 - - gmx:100816045 1631.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00815 13 22443976 22447798 Gma13g00815 13 22443976 22447798 ECH
Gma17g00550 17 4524644 4528424 Gma13g00815 13 22443976 22447798 GST
Gma13g00815 13 22443976 22447798 Gma15g01555 15 14834194 14838562 PCT
Gma13g00815 13 22443976 22447798 Gma09g00549 09 5789871 5794187 PCT
Gma15g01555 15 14834194 14838562 Gma13g00815 13 22443976 22447798 PCT
Gma09g00549 09 5789871 5794187 Gma13g00815 13 22443976 22447798 PCT