Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00514 ATGGCTCTAAACTACCCTTTTTTAACCTACTTCATACTACTGCTAGTAACCATAACCCGTTTGATATTCACTGTGGGAAAAACTGAGCAATGGAAAGCTCCGATTCTACCAGAGCTTGACATTGATAACATATCCCACAAACTCCATGATGACCCTGAAACCATTCAAATGGCTTCAAGGGACTATGGCCATTTAACGCATGAATTCCCATTAGCTGTGTTTCGTCCATCTTCTATAGATGACATAGTCACCTTGATAAAATCTTCGTACAATAGCTCTGCCCCTTTTGACATAGCTGCGAGGGGCCAAGGCCACTCCACTCATGGACAAGCCATGGCTCGTGATGGGATTGTGGTGGACATGGCCAGCCTAAGAAAACAAAGAAATGGGGTTGCGATTAGTGTCTCTAAGGACCCTTTGATGGGTCACTATGCTGATGTTGGAGGGGAACAACTCTGGATTGATGTGCTACATGCCACACTTGAATATGGACTTGCACCAGTTTCTTGGACTGATTATTTGTACTTGACCGTGGGAGGGACACTTTCTAATGCTGGAATCAGTGGCCAGAGCTTCCGTTATGGACCTCAAATCAGCAACGTTCATGAAATGGATGTCATCACTGGAAAAGGAGAGTTCGTAACATGCTCTTCACAGAAGAACTTGGAGTTATTCCACGCGGTTCTTGGAGGCTTGGGACAATTTGGAGTTATAGCAAGGGCGAGAATTGCTCTTGAGCCAGCACCCAAAAGGGTTAAGTGGGTCAGACTACTTTATAGTGACTTTTCTGCTTTTACCAAAGACCAGGAACGATTAATCTCAATCAATGGAAGGAAACAAAAGAACGCATTGGATTTTCTGGAAGGGATGCTGCTAATGAACCAAGGCCCCATAAATAATTGGAGATCCTCTTTCTTCCCTCTATCTGACCATCCCAGAATAGCTTCTTTAATAACTGAACATAGCATCCTCTACTGTCTTGAAGTGGCTAAATATTATGACGAACAAACCGAGTTAAATGTGGACAAGGAAATTGAAGTTTTGCTCCAAGGACTAGCCTATATCCCTGGATTTAATTATGAGAAAAATGTCTCGTACGTTGAGTTCTTGAATAGGGTCCGAAGTGGAGAGTTGAAACTTCAGTCACAAGGACTGTGGGAAGTTCCTCACCCGTGGCTTAATTTGTTTATACCAAAATCTCAAATCTTGGATTTTAATTCAGGAGTATTCAAAGATATAGTTCTTAAAAGAAACATCTCCTCTGGACCAGTCTTGGTTTATCCCATGAATAGAAACAAgtggtacgataggatgtcagcatctataccagacgaggatgttttctacacagttgggtttttgcactcaaAGGCTATTTGCTTTGAGGCCTCCATATTGGGACCAGAGGCAGGCTATTGA 1419 0.4052 MALNYPFLTYFILLLVTITRLIFTVGKTEQWKAPILPELDIDNISHKLHDDPETIQMASRDYGHLTHEFPLAVFRPSSIDDIVTLIKSSYNSSAPFDIAARGQGHSTHGQAMARDGIVVDMASLRKQRNGVAISVSKDPLMGHYADVGGEQLWIDVLHATLEYGLAPVSWTDYLYLTVGGTLSNAGISGQSFRYGPQISNVHEMDVITGKGEFVTCSSQKNLELFHAVLGGLGQFGVIARARIALEPAPKRVKWVRLLYSDFSAFTKDQERLISINGRKQKNALDFLEGMLLMNQGPINNWRSSFFPLSDHPRIASLITEHSILYCLEVAKYYDEQTELNVDKEIEVLLQGLAYIPGFNYEKNVSYVEFLNRVRSGELKLQSQGLWEVPHPWLNLFIPKSQILDFNSGVFKDIVLKRNISSGPVLVYPMNRNKWYDRMSASIPDEDVFYTVGFLHSKAICFEASILGPEAGY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00514 472 SUPERFAMILY FAD-binding/transporter-associated domain-like 46 247 IPR036318 GO:0050660
Gma17g00514 472 Gene3D - 51 120 IPR016167 -
Gma17g00514 472 ProSiteProfiles PCMH-type FAD-binding domain profile. 66 248 IPR016166 GO:0071949
Gma17g00514 472 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 70 105 IPR006093 GO:0016491
Gma17g00514 472 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 249 458 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gma17g00514 472 SUPERFAMILY FAD-linked oxidases, C-terminal domain 249 457 IPR016164 GO:0003824|GO:0050660
Gma17g00514 472 PANTHER GULONOLACTONE OXIDASE 11 457 - -
Gma17g00514 472 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 11 457 - -
Gma17g00514 472 Gene3D - 251 457 IPR016170 -
Gma17g00514 472 Gene3D - 121 250 IPR016169 -
Gma17g00514 472 Pfam FAD binding domain 70 217 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00514 Gma-Chr17 4229266 4235693 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00514 K00279 - gmx:100787676 916.376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00514 17 4229266 4235693 Gma13g00846 13 22732326 22736340 GST
Gma17g00514 17 4229266 4235693 Gma15g01593 15 15596260 15604052 PCT
Gma17g00514 17 4229266 4235693 Gma09g00580 09 6299053 6303527 PCT
Gma15g01593 15 15596260 15604052 Gma17g00514 17 4229266 4235693 PCT
Gma09g00580 09 6299053 6303527 Gma17g00514 17 4229266 4235693 PCT