LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma09g00580	ATGGTAGCTGGGAAATACCCTTCCCCCACATACTTCATCCTCCTGCTCATAACCATAACACGTTTGATCTCCACAGTGGGCAAGACCTCCCAATGGATGAAGGCCCTAACGCCGCCTCCGGAACTCGCCTCGGTCTCCCTCGATGACACCATCTTCAGCAAGCTCCGCAACGACCCAGAGGCCCTCCAGGGGAGGGCCTCCAGGGACTACGGGAACCTCGTCCGCGAGGTTCCCTCGGCGGTCTTCCACCCGACCTCGTCGAGCGACATCGCGAGGCTGATCAAGCTGTCGTACAACGGTTCTGTCCCCTTCAAGATAGCGGCGAGGGGGCAAGGGCACTCGACGAGGGGCCAGGCGATGGTACGTGATGGGGTGGTGGTGGACATGGCCGGGTTCAGAGAGAGAGGGAATGGAGAGGGAATAAGGGTTGTGATGAGTGTTGTTGTGGACCCTAATAATAAGAATGGTTATGGTTACTATTATGCTGATGTTGGAGGGGAACAGTTGTGGATCGATGTGCTAAACGCCACGCTTGAGCATGGACTTGCACCTATGTCCTGGACTGATTACTTGTACTTGACGGTGGGAGGAACTCTCTCCAATGCTGGCATCAGTGGCCAGACATTCCGCTATGGTCCTCAAATCACCACTGTCCGCCAAATGGACGTCATCACTGGAAAGGGAGAATTTGTGACTTGCTCTCAGCAGACGAATTCGGAGTTGTTCCACGCGGTTCTGGGGGGCTTAGGACAATTTGGAATTATAACAAGGGCAAGAATCGCTCTTGCCCCAGCTCCCAAGAGGGTTAAATGGGTGAGACTTTTGTACAATGACTTTTCTGCTTTCACCAAAGACCAGGAACAACTAATCTCAATCACTAGAAGGAAACAAAATATTGCACTGGATTATTTGGAAGGATTGCTGCTAATGCACCAAGGACCCATAAATAATTGGAGATCTTCTTTCTTCCCTTTAGCCGACCATGCCCGAATAATTTCGCTAGTAACTAAACACAGCGTCCTCTATTGCCTAGAAGTTGCCAAATATTATGATGGCCAAAATGAAAACAATGTGGACAAGGAACTCAAAGTTTTACTACAAGGACTGAGCTATATCCCTGGATTTTACTATGAAAAAGATGTCTCGTATGTTGAGTTCTTGAATAGAGTTCGAAGTGGAGAGTTGAAGCTACAATCACAAGGACTATGGGATGTTCCTCACCCATGGCTTAATTTGTTTATACCGAAATCTCAAATCATGGAATTTGACTCGGGCGTGTTCAAGAATATCATCCTTAAACGAAACATTACCACAGGACCCGTCTTGGTTTACCCCATGAATAGAAACAAgtgggacaataggatgtcagcatcaatacccgacgaggatatcttctacacagttggatttttgcattcaagtgggtttgataattggaaggcctatgatgctcaaaataaagaaattctacaattttgtaacgattctgggatcaaggttaagcaatatcttccccactaccgcacacaagaagattggacaaaccattttggccctaaatggaggacttttgtagaaagaaaacaccagtttgatccaaaaatgattctatcacctggacaaagaatcttTAACAATTAA	1641	0.3998	MVAGKYPSPTYFILLLITITRLISTVGKTSQWMKALTPPPELASVSLDDTIFSKLRNDPEALQGRASRDYGNLVREVPSAVFHPTSSSDIARLIKLSYNGSVPFKIAARGQGHSTRGQAMVRDGVVVDMAGFRERGNGEGIRVVMSVVVDPNNKNGYGYYYADVGGEQLWIDVLNATLEHGLAPMSWTDYLYLTVGGTLSNAGISGQTFRYGPQITTVRQMDVITGKGEFVTCSQQTNSELFHAVLGGLGQFGIITRARIALAPAPKRVKWVRLLYNDFSAFTKDQEQLISITRRKQNIALDYLEGLLLMHQGPINNWRSSFFPLADHARIISLVTKHSVLYCLEVAKYYDGQNENNVDKELKVLLQGLSYIPGFYYEKDVSYVEFLNRVRSGELKLQSQGLWDVPHPWLNLFIPKSQIMEFDSGVFKNIILKRNITTGPVLVYPMNRNKWDNRMSASIPDEDIFYTVGFLHSSGFDNWKAYDAQNKEILQFCNDSGIKVKQYLPHYRTQEDWTNHFGPKWRTFVERKHQFDPKMILSPGQRIFNN	546

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma09g00580	546	Pfam	FAD binding domain	78	234	IPR006094	GO:0050660
	Gma09g00580	546	Gene3D	-	129	267	IPR016169	-
	Gma09g00580	546	ProSiteProfiles	PCMH-type FAD-binding domain profile.	74	265	IPR016166	GO:0071949
	Gma09g00580	546	PANTHER	GULONOLACTONE OXIDASE	12	545	-	-
	Gma09g00580	546	SUPERFAMILY	FAD-linked oxidases, C-terminal domain	266	545	IPR016164	GO:0003824\|GO:0050660
	Gma09g00580	546	PANTHER	CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN	12	545	-	-
	Gma09g00580	546	Pfam	Cytokinin dehydrogenase 1, FAD and cytokinin binding	266	544	IPR015345	GO:0009690\|GO:0019139\|GO:0050660
	Gma09g00580	546	Gene3D	-	64	544	IPR016167	-
	Gma09g00580	546	ProSitePatterns	Oxygen oxidoreductases covalent FAD-binding site.	78	113	IPR006093	GO:0016491
	Gma09g00580	546	Gene3D	-	268	503	IPR016170	-
	Gma09g00580	546	SUPERFAMILY	FAD-binding/transporter-associated domain-like	64	264	IPR036318	GO:0050660

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma09g00580	Gma-Chr9	6299053	6303527	Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma09g00580	K00279		-	gmx:100797928	1112.06

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma09g00580	09	6299053	6303527	Gma09g00580	09	6299053	6303527	ECH
	Gma15g01593	15	15596260	15604052	Gma09g00580	09	6299053	6303527	GST
	Gma17g00514	17	4229266	4235693	Gma09g00580	09	6299053	6303527	PCT
	Gma13g00846	13	22732326	22736340	Gma09g00580	09	6299053	6303527	PCT
	Gma09g00580	09	6299053	6303527	Gma17g00514	17	4229266	4235693	PCT
	Gma09g00580	09	6299053	6303527	Gma13g00846	13	22732326	22736340	PCT