LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma13g00846	ATGGCTCTACACTACCCTTTTCCAACCTACTTCATACTACTACTAGTAACCATAACCCGTTTGATATACACCGTGGGAAAAACCGAGCAATGGAAAGCTCCGATTCTAACAGAGCTTGACATTAATAACATATCCCACAAACTCCATGATGATCCTGAAATCATTCAAATGGCTTCAAGGGACTATGGCCACATCGTGCATGAATTCCCATTAGCTGTGTTTCGTCCATCTTCTATAGACGACATAGCCACCTTGATAAAATCCTCCTACAATAGCTTTGCCCCTTTTGGCATAGCTGCGAGGGGCCAAGGCCACTCCACTCATGGACAAGCCATGGCTCGTGATGGGGTTGTGGTTGACATGGCCAACCTCAGAAAACAAAGAAATGGGGTTGCGATTAGTGTCTCTAAGGACCCTTTGATGGGTCACTATGCGGATGTTGGAGGGGAACAACTCTGGATTGATGTGCTACATACCACACTTAAACATGGACTTGCACCAGTTTCTTGGACTGATTATTTGTACTTGACCGTGGGAGGGACACTTTCCAATGCTGGAATCAGTGGCCAGAGCTTCCGTTATGGACCTCAAATCAGCAACGTTCATGAAATGGATGTCATCACTGGAAAAGGAGAGTTCGTAACTTGCTCTTCACAGAAGAACTTGGAGTTATTCCACGCGGTTCTTGGAGGCTTAGGGCAATTTGGAGTTATAGCAAGGGCGAGAATAGCACTTGAGCCAGCCCCCAAAAGGGTTAAGTGGGTCAGACTACTTTATAGTGACTTTTTTGCTTTTACCAAAGATCAGGAACGATTAATCTCAATCAATGGAAGGAAACAAAAGAACGCATTGGATTTTCTGGAAGGGATGCTGCTAATGAACCAAGGCCCCATAAATAATTGGAGATCCTCTTTCTTCCCTCTATCTGACCATCCCAGAATATCTTCTTTAATAACTGAACATAGCATCCTCTACTGTCTTGAAGTGGCTAAATATTATGACGAACAAACCGAGATAAATGTGGACAAGGAAATTCAAGTTTTGCTCCAAGGACTAGCCTATATCCCTGGGTTTTATTATGAGAAAAACGTGTCGTACGTTGAGTTCTTGAATAGGGTCCGAAGTGGAGAGTTGAAGCTTCAGTCACAAGGACTGTGGGATGTTCCTCACCCATGGCTTAATTTGTTTATACCAAAATCTCAAATCTTGGATTTTAATTCAAGAGTATTCAAAGATATAGTTCTTAAAAGAAACATCTCCTCTGGACCAGTCTTGGTTTACCCCACGAATAGAAACAAgtgggacgataggatgtcagcatctataccagacgaggaggttttctacacagttggatttttgcactcaagtgggtttgatacttggaaagcatatgatgctcaaaacagtgaaattttggagttctgtagagatgctggcatcaaggtcaagcaatatcttcccaaccacagcacacaggaagattggacaaaccattttggtgctaaatggataaaattcttagaaagaaaacatcagtttgatccaagaatgattctatcaccagggcaaaaaatcttccacaaaCAATTACAGCCAGCGTTTTAA	1608	0.3514	MALHYPFPTYFILLLVTITRLIYTVGKTEQWKAPILTELDINNISHKLHDDPEIIQMASRDYGHIVHEFPLAVFRPSSIDDIATLIKSSYNSFAPFGIAARGQGHSTHGQAMARDGVVVDMANLRKQRNGVAISVSKDPLMGHYADVGGEQLWIDVLHTTLKHGLAPVSWTDYLYLTVGGTLSNAGISGQSFRYGPQISNVHEMDVITGKGEFVTCSSQKNLELFHAVLGGLGQFGVIARARIALEPAPKRVKWVRLLYSDFFAFTKDQERLISINGRKQKNALDFLEGMLLMNQGPINNWRSSFFPLSDHPRISSLITEHSILYCLEVAKYYDEQTEINVDKEIQVLLQGLAYIPGFYYEKNVSYVEFLNRVRSGELKLQSQGLWDVPHPWLNLFIPKSQILDFNSRVFKDIVLKRNISSGPVLVYPTNRNKWDDRMSASIPDEEVFYTVGFLHSSGFDTWKAYDAQNSEILEFCRDAGIKVKQYLPNHSTQEDWTNHFGAKWIKFLERKHQFDPRMILSPGQKIFHKQLQPAF	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma13g00846	535	Gene3D	-	121	250	IPR016169	-
	Gma13g00846	535	Gene3D	-	52	527	IPR016167	-
	Gma13g00846	535	SUPERFAMILY	FAD-binding/transporter-associated domain-like	47	247	IPR036318	GO:0050660
	Gma13g00846	535	Pfam	Cytokinin dehydrogenase 1, FAD and cytokinin binding	249	527	IPR015345	GO:0009690\|GO:0019139\|GO:0050660
	Gma13g00846	535	PANTHER	CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN	11	527	-	-
	Gma13g00846	535	ProSiteProfiles	PCMH-type FAD-binding domain profile.	66	248	IPR016166	GO:0071949
	Gma13g00846	535	Pfam	FAD binding domain	70	217	IPR006094	GO:0050660
	Gma13g00846	535	ProSitePatterns	Oxygen oxidoreductases covalent FAD-binding site.	70	105	IPR006093	GO:0016491
	Gma13g00846	535	Gene3D	-	251	486	IPR016170	-
	Gma13g00846	535	PANTHER	GULONOLACTONE OXIDASE	11	527	-	-
	Gma13g00846	535	SUPERFAMILY	FAD-linked oxidases, C-terminal domain	249	527	IPR016164	GO:0003824\|GO:0050660

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma13g00846	Gma-Chr13	22732326	22736340	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma13g00846	K00279		-	gmx:100782645	1095.49

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma13g00846	13	22732326	22736340	Gma13g00846	13	22732326	22736340	ECH
	Gma17g00514	17	4229266	4235693	Gma13g00846	13	22732326	22736340	GST
	Gma13g00846	13	22732326	22736340	Gma15g01593	15	15596260	15604052	PCT
	Gma13g00846	13	22732326	22736340	Gma09g00580	09	6299053	6303527	PCT
	Gma15g01593	15	15596260	15604052	Gma13g00846	13	22732326	22736340	PCT
	Gma09g00580	09	6299053	6303527	Gma13g00846	13	22732326	22736340	PCT