Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00487 ATGAGCCACTTGGAATACCAATGCTTTCTCTTACAAGTTGAGAGAGTGTTTGTCCCACCAAAGCAAAAGATTTACAGGCATGTCTCTGAAGCGGGAAAAAATAATCATGAGTGTGAAATAGTAGCCAAGGTGGAGATGAAGGCCAACAAAGAAGAGAAAAATTCTGAAGAGGAAGCCATTCATCAGTTCAGAATTACAGAAGTACATGTTGCAGGTCTGAAGACTGAGCCTCTCAAAAAGAAGTTTTGGGGCACTTCAAGACGACAACAACAGCAACAGTCTGGTTCTCGCTGGTTGATTGCTAATGGAATGGGGAAGAACAATAAGAATTCATTGGTGAAGTCAAAGGTTGTATCTAAATCAAGTGCTCCAATCACCACCGCAAACGTGCAACCCGGTGACACATTGTGGAGCATATCACCTCGTATTTATGGTACTGGAACAAGATGGAAGGAATTGAAAGAGCTAAATCCACATATAAGAAATCCCAATATCAAAATACCAAATAAAACTAGTACGTGGAGTGCACGATTCAATTTTTTGCTATAA 549 0.4026 MSHLEYQCFLLQVERVFVPPKQKIYRHVSEAGKNNHECEIVAKVEMKANKEEKNSEEEAIHQFRITEVHVAGLKTEPLKKKFWGTSRRQQQQQSGSRWLIANGMGKNNKNSLVKSKVVSKSSAPITTANVQPGDTLWSISPRIYGTGTRWKELKELNPHIRNPNIKIPNKTSTWSARFNFLL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00487 182 CDD LysM 130 167 IPR018392 -
Gma17g00487 182 ProSiteProfiles LysM domain profile. 126 174 IPR018392 -
Gma17g00487 182 Pfam LysM domain 130 167 IPR018392 -
Gma17g00487 182 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 10 173 IPR039614 -
Gma17g00487 182 Gene3D LysM domain 119 173 IPR036779 -
Gma17g00487 182 MobiDBLite consensus disorder prediction 84 107 - -
Gma17g00487 182 SUPERFAMILY LysM domain 126 165 IPR036779 -
Gma17g00487 182 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 10 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00487 Gma-Chr17 4002882 4003525 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00487 - - lja:Lj4g3v2179220.1 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00487 17 4002882 4003525 Gma13g00877 13 23008130 23010742 GST
Gma17g00487 17 4002882 4003525 Gma15g01621 15 16058285 16062877 PCT
Gma17g00487 17 4002882 4003525 Gma09g00611 09 6798037 6802068 PCT
Gma15g01621 15 16058285 16062877 Gma17g00487 17 4002882 4003525 PCT
Gma09g00611 09 6798037 6802068 Gma17g00487 17 4002882 4003525 PCT