Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma17g00450 ATGATGGTGGAGACCTCGACGCTAGGGCACTTCCACCACCAAAGGCTCGACCTTCGCCGCTGGGTCCCCGCGTTCTTCACCTCGCATAAGACCCTCTTGACCCTTCTATGGATCGCCGCCTTCGCCTCCGTTTTTCTGTGGCAGAGGAACATAGTGGGCGGGTTTCTGGTCTACGGAGGAATTCCGGGCAGGCCCATGCCCATGCTCCGCCCAATGGCCTTCAATTTGACGGATTTCGGTGGGGTCGGTGACGGCGTTACTCTCAACACCGAGGCTTTCGAGAGGGCCGTTTCTGCGGTTTCTAAGTTCGGGAAGAAAGGCGGTGCGCAGTTGAATGTGCCTCCTGGACGCTGGCTCACGGCGCCGTTTAATCTCACCAGCCACATGACTCTCTTTCTAGCTGAAGATGCTGTTATACTTGGCATTGATGATGAAAAATATTGGCCACTGATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAACATCTTAAAGATGTTGTGATAACAGGGCATAACGGTACCATAAATGGACAGGGACAGTCATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACTAGGGGGCCACTTGTTCAGATCATGTTTTCTAGTGACATTGTGATCACTAATATTACTTTGCGTGACTCTCCTTTCTGGACAATTCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTGACTATATTGGCTCCTGTGTTTGGAGCTCCAAATACTGATGGCATAGATCCTGACTCTTGTGAGGATATGCTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCTGTAAAAAGTGGCTGGGATCAGTATGGAATTGATTATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGCATCTCAATAGGCAGTGAAATGTCTGGCGGGGTATCCAATGTCACGGTGGAGAATCTTCTTATATGGGATTCTAGGCGCGGTGTGAGGATCAAGACCGCCCCTGGACGAGGAGCATATGTGCGCCAAATAACTTATCGGAATATAACATTTGAGAATGTTCGAGTTGGAATTGTTATGAAGACAGATTACAATGAACACCCTGATGATGGGTATGACCCTTTGGCACTCCCAATTCTCAGAGACATAAGCTTTACCACAGTCCATGGCCAAGGAGTTCGCGTGCCAGTACGCATACACGGTAGTGAAGAGATTCCTGTGAGAAATGTGACTTTTAAAGATATGTCAGTTGGTCTAACCTACAAGAAGAAGCATATCTTTCAGTGTGCATTTGTTCAAGGCCGTGTAATAGGTACCATCTATCCTGCTCCCTGTGAGAACCTTGATCGGTACAATGAGCAAGGACAGTTGGTAAAGCATTCTGCGTCCCAGAATGTAACAGATATAGATTATGATTTTTGA 1479 0.4733 MMVETSTLGHFHHQRLDLRRWVPAFFTSHKTLLTLLWIAAFASVFLWQRNIVGGFLVYGGIPGRPMPMLRPMAFNLTDFGGVGDGVTLNTEAFERAVSAVSKFGKKGGAQLNVPPGRWLTAPFNLTSHMTLFLAEDAVILGIDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQHLKDVVITGHNGTINGQGQSWWKKYRQKRLNHTRGPLVQIMFSSDIVITNITLRDSPFWTIHPYDCKNITIKGVTILAPVFGAPNTDGIDPDSCEDMLIEDCYISVGDDAIAVKSGWDQYGIDYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGVSNVTVENLLIWDSRRGVRIKTAPGRGAYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPLALPILRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFKDMSVGLTYKKKHIFQCAFVQGRVIGTIYPAPCENLDRYNEQGQLVKHSASQNVTDIDYDF 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma17g00450 492 SUPERFAMILY Pectin lyase-like 66 465 IPR011050 -
Gma17g00450 492 Gene3D - 65 454 IPR012334 -
Gma17g00450 492 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 23 490 - -
Gma17g00450 492 SMART pbh1 218 240 IPR006626 -
Gma17g00450 492 SMART pbh1 360 381 IPR006626 -
Gma17g00450 492 SMART pbh1 269 290 IPR006626 -
Gma17g00450 492 SMART pbh1 241 268 IPR006626 -
Gma17g00450 492 SMART pbh1 303 325 IPR006626 -
Gma17g00450 492 SMART pbh1 331 352 IPR006626 -
Gma17g00450 492 PANTHER PECTIN LYASE-RELATED 23 490 - -
Gma17g00450 492 Pfam Glycosyl hydrolases family 28 169 451 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma17g00450 Gma-Chr17 3693290 3701634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma17g00450 10 491 Glycoside Hydrolase AT1G19170 74.747 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma17g00450 - - gmx:100818529 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00450 17 3693290 3701634 Gma17g00450 17 3693290 3701634 ECH
Gma17g00450 17 3693290 3701634 Gma13g00919 13 23333854 23341399 GST
Gma17g00450 17 3693290 3701634 Gma15g01678 15 17488952 17494246 PCT
Gma17g00450 17 3693290 3701634 Gma09g00653 09 7448055 7453858 PCT
Gma15g01678 15 17488952 17494246 Gma17g00450 17 3693290 3701634 PCT
Gma09g00653 09 7448055 7453858 Gma17g00450 17 3693290 3701634 PCT