Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00919 ATGGTGGAGAACTCGACGCTAGGGCGCTTCCACCACCAAAGGCTCGACCTTCGCCGCTGGGTCCCCGCGTTCTTCACCTCGCACAAGACCCTCTTGACCTTTCTATGGATCGCCGCCTTCGCCTCCGTTTTTCTGTGGCAGAGGAACATAGCTGGTGGCTTTCTGGTCTACGGAGGAATTCCGGCCAGGCCCATGCCCATGCTCCGCCCCATGGCCTTCAATTTGACGGATTTCGGAGGGGTCGGTGACGGCGTTACTCTCAACACCGAGGCTTTCAAGAGGGCCGTTTCAGCGGTTTCTAAGTTCGGCAAGAAAGGCGGTGCGCAGTTGAATGTGCCTCCCGGACGCTGGCTCACGGCGCCGTTTAATCTAACCAGCCACATGACTCTCTTCCTAGCTGAAGATGCTGTTATACTTGGCATTGATGATGAAAAATATTGGCCATTGATGCCTCCATTGCCTTCATATGGGTATGGGAGGGAGCATCCTGGGCCTCGATATGGCAGTTTGATTCATGGTCAACATCTTAAAGATGTTGTGATAACAGGGCATAACGGTACCATAAATGGACAGGGACAAACATGGTGGAAAAAATATCGCCAGAAGCGTCTCAACCACACTAGGGGGCCACTTGTTCAGATCATGTTTTCTAGTGACATTGTGATCACCAATATAACTTTGCGTGACTCTCCTTTCTGGACACTTCATCCATATGACTGCAAAAACATTACAATAAAAGGTGTTACTATATTGGCTCCTGTGTTTGGAGCTCCAAATACTGATGGCATAGATCCTGACTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGAGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAGTATGGAATTGCTTATGGAAGGCCTTCCATGAATATAATGATCCGAAACCTTGTTGTTCGCTCTATGGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGCGGGGTATCCAACGTCATGGTGGAGAATATTCTTATATGGGATTCTAGGCGTGGTGTGAGGATCAAGACCGCCCGTGGACGAGGAGCATATGTGCGCCAAATAACTTATCGGAATATAACATTTGAGAATGTTCGAGTTGGAATAGTTATGAAGACAGATTACAATGAACACCCTGATGATGGGTATGATCCTATGGCACTCCCAATTCTCAGAGACATAAGCTTTACCACGGTCCATGGCCAAGGAGTTCGTGTGCCAGTACGCATACACGGTAGTGAGGAGATTCCTGTGAGAAATGTGACTTTTCAAGACATGTCAGTTGGTCTAACCTACAAGAAAAAGCATATCTTTCAGTGTGCATTTGTTCAAGGCCGTGTAATAGGTACCATCTATCCTGCTCCCTGTGAGAACCTTGATCGGTACAATGAGCAAGGACAGTTGGTTAAGCATTCTGCGTCCCAGAATGTAACAGATATAGATTATGATATTTGA 1476 0.4722 MVENSTLGRFHHQRLDLRRWVPAFFTSHKTLLTFLWIAAFASVFLWQRNIAGGFLVYGGIPARPMPMLRPMAFNLTDFGGVGDGVTLNTEAFKRAVSAVSKFGKKGGAQLNVPPGRWLTAPFNLTSHMTLFLAEDAVILGIDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQHLKDVVITGHNGTINGQGQTWWKKYRQKRLNHTRGPLVQIMFSSDIVITNITLRDSPFWTLHPYDCKNITIKGVTILAPVFGAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMNIMIRNLVVRSMVSAGISIGSEMSGGVSNVMVENILIWDSRRGVRIKTARGRGAYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPMALPILRDISFTTVHGQGVRVPVRIHGSEEIPVRNVTFQDMSVGLTYKKKHIFQCAFVQGRVIGTIYPAPCENLDRYNEQGQLVKHSASQNVTDIDYDI 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00919 491 Gene3D - 62 453 IPR012334 -
Gma13g00919 491 SUPERFAMILY Pectin lyase-like 63 464 IPR011050 -
Gma13g00919 491 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 21 489 - -
Gma13g00919 491 Pfam Glycosyl hydrolases family 28 168 450 IPR000743 GO:0004650|GO:0005975
Gma13g00919 491 SMART pbh1 268 289 IPR006626 -
Gma13g00919 491 SMART pbh1 240 267 IPR006626 -
Gma13g00919 491 SMART pbh1 302 324 IPR006626 -
Gma13g00919 491 SMART pbh1 359 380 IPR006626 -
Gma13g00919 491 SMART pbh1 330 351 IPR006626 -
Gma13g00919 491 SMART pbh1 420 441 IPR006626 -
Gma13g00919 491 PANTHER PECTIN LYASE-RELATED 21 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00919 Gma-Chr13 23333854 23341399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00919 1 491 Glycoside Hydrolase AT1G19170 74.111 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00919 - - gmx:100801914 1009.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00919 13 23333854 23341399 Gma13g00919 13 23333854 23341399 ECH
Gma17g00450 17 3693290 3701634 Gma13g00919 13 23333854 23341399 GST
Gma13g00919 13 23333854 23341399 Gma15g01678 15 17488952 17494246 PCT
Gma13g00919 13 23333854 23341399 Gma09g00653 09 7448055 7453858 PCT
Gma15g01678 15 17488952 17494246 Gma13g00919 13 23333854 23341399 PCT
Gma09g00653 09 7448055 7453858 Gma13g00919 13 23333854 23341399 PCT