Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma09g00653 ATGGTGGAGAGCACAGAACCAGGAGCGAGAGGGATACTCGGGTTGTTCCAGTTCCAGTTACTCCACCCCAAAACGACACCCTTCGCGTCTCACAAGACGCTCTTAGCGTTCCTGTGGGTGGCCACGCTGGCCTCGGTGTTGTTGTGGCAGAGAACTACGATCAGCGGGTTTCTGGTGCAGGGCGGCGTGCCGGTGAGGGCGCCGCCGAAGCTAAGGCCGGTGGTTTTCTGTTTGACGGAGTTCGGCGGTGTCGGCGACGGCGTTACGCTCAACACGGAGGCGTTTGAGAGAGGTGTTGGTGCGATCTCGAAGTTGGGAGATAAGGGTGGGGGTCAACTTAATGTGCCACCTGGGCGGTGGCTCACTGCGCCGTTTAATCTCACCAGTCATATGACGCTCTTTCTTGCCAGAGATTCTGTCATACTTGCAGTTCAGGATGAAAAGTATTGGCCATTGATGCCCGCATTGCCTTCATATGGGTATGGAAGGGAGCATCCTGGTCCTCGATATAGCAGTTTAATTCATGGTCAAAATCTTAGAGATGTTGTCATAACAGGCCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATCGCCAGAAGCTTCTGAACCACACAAGGGGGCCACTTGTTCAGATATTGTGGTCTAGTAACATTGTGATCTCAAATATTACTCTGCGTGACTCTCCTTTTTGGACACTTCATCCATATGACTGCAAAAATGTTACAGTTAAAAATGTTACTATATTGGCTCCTGTTTCTCATGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAATATGGAATAACTTATGGAAGGCCTTCCAAGAATATAGTAATTCGAAACCTTGTTGTTCGCTCTAATGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAACGTCCTGGTGGAGAACATTCTTGTATGGGAATCAAGGCGTGCCATGAGAATCAAGACTGCACCAGGAAGAGGTGGATATGTGCGTCAAATAACTTACAAAAATCTAATGTTCAAAAACGTTCGCGTTGGAATTGTGATCAAGACAGATTACAATGAACACCCTGGTACTGGATATGATCCTAGAGCACTTCCAATACTCAGAGACATAAGCTTCATCAACATTCGCGGTCAAGGAGTTCGTGTGCCTGTTCGAATTCAAGGTAGTGAACAGATTCCAGTTAGAAATGTGACTTTCCAGGATATGAAGATTGGCATAACTTACAAGAAGAAGCATATCTTCCAGTGTGCCTTTGTCCAAGGTCAGGCAATAGGGACCATCTTTCCTTCTCCCTGTGACAGCTTTGATCGGTACAATGAGCAAGGACAGCTTGTTAAGCATGCTGCTTCTCAGAATGTAACAGATATAGATTATGAAATTTGA 1485 0.464 MVESTEPGARGILGLFQFQLLHPKTTPFASHKTLLAFLWVATLASVLLWQRTTISGFLVQGGVPVRAPPKLRPVVFCLTEFGGVGDGVTLNTEAFERGVGAISKLGDKGGGQLNVPPGRWLTAPFNLTSHMTLFLARDSVILAVQDEKYWPLMPALPSYGYGREHPGPRYSSLIHGQNLRDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKNVTILAPVSHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYKNLMFKNVRVGIVIKTDYNEHPGTGYDPRALPILRDISFINIRGQGVRVPVRIQGSEQIPVRNVTFQDMKIGITYKKKHIFQCAFVQGQAIGTIFPSPCDSFDRYNEQGQLVKHAASQNVTDIDYEI 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma09g00653 494 Gene3D - 63 458 IPR012334 -
Gma09g00653 494 Pfam Glycosyl hydrolases family 28 171 454 IPR000743 GO:0004650|GO:0005975
Gma09g00653 494 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 24 492 - -
Gma09g00653 494 PANTHER PECTIN LYASE-RELATED 24 492 - -
Gma09g00653 494 SUPERFAMILY Pectin lyase-like 66 467 IPR011050 -
Gma09g00653 494 SMART pbh1 243 270 IPR006626 -
Gma09g00653 494 SMART pbh1 362 383 IPR006626 -
Gma09g00653 494 SMART pbh1 305 327 IPR006626 -
Gma09g00653 494 SMART pbh1 271 292 IPR006626 -
Gma09g00653 494 SMART pbh1 423 444 IPR006626 -
Gma09g00653 494 SMART pbh1 333 354 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma09g00653 Gma-Chr9 7448055 7453858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma09g00653 16 494 Glycoside Hydrolase AT1G19170 72.323 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma09g00653 - - gmx:100800910 1008.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma09g00653 09 7448055 7453858 Gma09g00653 09 7448055 7453858 ECH
Gma15g01678 15 17488952 17494246 Gma09g00653 09 7448055 7453858 GST
Gma17g00450 17 3693290 3701634 Gma09g00653 09 7448055 7453858 PCT
Gma13g00919 13 23333854 23341399 Gma09g00653 09 7448055 7453858 PCT
Gma09g00653 09 7448055 7453858 Gma17g00450 17 3693290 3701634 PCT
Gma09g00653 09 7448055 7453858 Gma13g00919 13 23333854 23341399 PCT