Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g01678 ATGGTGGAAAACACAGGACAAGGAGGAGGCATATGGTTCCAGTTGTTCCACCCCAAAACGGCGCCGTTCGCGTCTCACAAGACGCTCTTTGTGTTCCTGTGGGTGGCCACGCTGGCCTCGGTGTTGGTGTGGCAGAGGACCACCATCAGCGGGTTTCTTGTGCTCGGCGGCGTCCCCGTGAGGACGCCGCCGAAGCTAAGGCCGGTGGTGTTCTGTTTAACGGAGTTCGGCGGTGTTGGCGACGGCGTTACTCTCAACACGGAGGCGTTTGAGAGAGGCGTTGGTGCCATTTCCAAGTTGGGGGATAAGGGTGGTGGACAACTGAATGTGCCACCTGGGCGGTGGCTCACTGCTCCGTTTAATCTCACCAGTCACATGACTCTCTTTCTTGCGAGAGATGCTGTCATACTTGCAGTTCAGGATGAAAAGTATTGGCCACTGATGCCTGCATTGCCTTCATATGGGTATGGAAGGGAGCATCCCGGTCCTCGATATAGTAGTTTAATTCATGGTCAAAATCTTGTAGATGTTGTCATAACAGGCCACAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAGTATCGCCAGAAGCTTCTGAACCACACAAGGGGGCCACTTGTTCAGATATTGTGGTCTAGTAACATTGTGATTTCAAATATTACTCTGCGTGACTCTCCCTTTTGGACACTTCATCCATATGACTGCAAAAATGTTACAGTAAAAAAGGTTACTATATTGGCTCCTGTTTCTCATGCTCCAAATACTGATGGCATAGATCCTGATTCTTGTGAGGATATGTTGATAGAGGACTGTTACATAAGTGTGGGGGATGATGCAATTGCAATAAAAAGTGGCTGGGATCAATACGGAATTACTTATGGAAGGCCTTCCAAGAATATAGTAATTCGAAACCTTGTTGTTCGCTCTAACGTCAGTGCTGGCATCTCAATAGGCAGTGAGATGTCTGGTGGGGTATCCAATGTCCTGGTGGAGAACATTCTTGTATGGGAATCAAGGCGTGCCATGAGAATCAAGACTGCTCCAGGAAGAGGCGGATATGTGCGGCAAATAACATACAAAAATCTAATGTTAAAAAATGTGCGCGTTGGAATTGTGATCAAGACAGATTACAATGAACACCCTGGTGCTGGATATGATCCTAGAGCACTTCCAATACTCAGAGACATAAGCTTCATGAATATCCGCGGCCAGGGTGTTCGCGTGCCGGTTCGAATTCAAGGCAGTGAACAGATTCCAGTTAGAAATGTGACTTTCCAGGATATGAAAGTTGGCATAACCTACAAGAAGAAACATATCTTCCAGTGTGCCTTTGTCCAAGGTCAGGCAATAGGGACCATATTTCCTTCTCCCTGTGACAGCTTTGATCGGTACAATGAGCAAGGACAGCTTGTTAAGCATGCTGCTTCACAGAATGTCACAGATATAGATTATGAAATTTGA 1470 0.4687 MVENTGQGGGIWFQLFHPKTAPFASHKTLFVFLWVATLASVLVWQRTTISGFLVLGGVPVRTPPKLRPVVFCLTEFGGVGDGVTLNTEAFERGVGAISKLGDKGGGQLNVPPGRWLTAPFNLTSHMTLFLARDAVILAVQDEKYWPLMPALPSYGYGREHPGPRYSSLIHGQNLVDVVITGHNGTINGQGQTWWTKYRQKLLNHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKKVTILAPVSHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYKNLMLKNVRVGIVIKTDYNEHPGAGYDPRALPILRDISFMNIRGQGVRVPVRIQGSEQIPVRNVTFQDMKVGITYKKKHIFQCAFVQGQAIGTIFPSPCDSFDRYNEQGQLVKHAASQNVTDIDYEI 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g01678 489 Pfam Glycosyl hydrolases family 28 166 449 IPR000743 GO:0004650|GO:0005975
Gma15g01678 489 SUPERFAMILY Pectin lyase-like 60 462 IPR011050 -
Gma15g01678 489 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 20 487 - -
Gma15g01678 489 Gene3D - 59 453 IPR012334 -
Gma15g01678 489 PANTHER PECTIN LYASE-RELATED 20 487 - -
Gma15g01678 489 SMART pbh1 357 378 IPR006626 -
Gma15g01678 489 SMART pbh1 238 265 IPR006626 -
Gma15g01678 489 SMART pbh1 266 287 IPR006626 -
Gma15g01678 489 SMART pbh1 418 439 IPR006626 -
Gma15g01678 489 SMART pbh1 300 322 IPR006626 -
Gma15g01678 489 SMART pbh1 328 349 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g01678 Gma-Chr15 17488952 17494246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g01678 13 489 Glycoside Hydrolase AT1G19170 72.211 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g01678 - - gmx:100791187 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g01678 15 17488952 17494246 Gma15g01678 15 17488952 17494246 ECH
Gma15g01678 15 17488952 17494246 Gma09g00653 09 7448055 7453858 GST
Gma17g00450 17 3693290 3701634 Gma15g01678 15 17488952 17494246 PCT
Gma13g00919 13 23333854 23341399 Gma15g01678 15 17488952 17494246 PCT
Gma15g01678 15 17488952 17494246 Gma17g00450 17 3693290 3701634 PCT
Gma15g01678 15 17488952 17494246 Gma13g00919 13 23333854 23341399 PCT