Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01298 ATGAGTGCCGTGAATTTGAACACATGGCCACGCCCCAGCTTCATTTTGAACCAAACCGCCACAAGAAGATCCAGATCCTCCCCAACCTCTCATTTCTTTCACGGCGTCAATAAGTTACCGTCACCCATTTCCTCCCTCACCGTTGCCAAACGCTCATTTACGCTCTCGGCGGTGCTGACGAAAGAGGACACCGTGGAGACGGAAGAGAAGCCACCGATTTTCGACTTCAAGAACTACATGGTTTCCAAAGCGAGCGCGGTGAACAAGGCCCTCGACGACGCCGTTTCGCTCCGCGAGCCGCAGAAGATCCACGAGGCGATGCGGTACTCGCTCCTCGCCGGCGGCAAGCGCGTGAGGCCGGTTTTGTGCGTGGCGGCCTGCGAGCTCGTCGGCGGCGAGGAGGCCACGGCGATGCCCGCCGCCTGCGCCATCGAGATGATCCACACCATGTCGCTCATCCACGATGACCTCCCCTGCATGGACAACGACGACCTCCGCCGCGGTAAGCCCACCAACCACAAGGTCTTCGGCGAGGACGTCGCCGTCCTCGCCGGCGACGCGCTCCTCGCCTTCGCCTTCGAGCACATCGCCGCCTCCACCCGGGGCGCCTCCCCGGGGCGGATCGTCCGCGCGATCGGCGAGCTTGCGCGGTCGATCGGCTCCGAGGGACTTGTCGCCGGCCAGGTCGTCGACATCAACTCCGAGGGCCTGGCCGACGTGGACCTCGAGCGCCTCGAGTTCATCCACGTCCACAAGACTGCCGCGCTCCTCGAGGGTGCGGTGGTGCTCGGCGCCATCCTCGGCGGCGGCACCGACGACGAGGTCGAGAAATTGAGAAAATTCGCTCGCTACATTGGTCTGCTCTTTCAGGTTGTTGATGACATTCTCGATGTTACCAAGTCATCTCAGGAATTGGGGAAAACCGCAGGAAAAGACCTTGTGGCAGATAAGGTTACTTACCCCAAACTTTTGGGTATTGAGAAATCTAAGGTGTTTGCTGCGAAGTTGAACAAAGATGCTCAGGATCAGCTTGTTGGGTTTGACCCTGTTAAGGCTGCTCCTTTGATTGCTTTAGCCAATTACATTGCTTATAGGCAGAACTAG 1104 0.5906 MSAVNLNTWPRPSFILNQTATRRSRSSPTSHFFHGVNKLPSPISSLTVAKRSFTLSAVLTKEDTVETEEKPPIFDFKNYMVSKASAVNKALDDAVSLREPQKIHEAMRYSLLAGGKRVRPVLCVAACELVGGEEATAMPAACAIEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAASTRGASPGRIVRAIGELARSIGSEGLVAGQVVDINSEGLADVDLERLEFIHVHKTAALLEGAVVLGAILGGGTDDEVEKLRKFARYIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSKVFAAKLNKDAQDQLVGFDPVKAAPLIALANYIAYRQN 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01298 367 SUPERFAMILY Terpenoid synthases 76 344 IPR008949 -
Gma16g01298 367 Pfam Polyprenyl synthetase 101 334 IPR000092 GO:0008299
Gma16g01298 367 Gene3D Farnesyl Diphosphate Synthase 73 367 IPR008949 -
Gma16g01298 367 SFLD Isoprenoid Synthase Type I 79 365 - -
Gma16g01298 367 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC 31 367 - -
Gma16g01298 367 ProSitePatterns Polyprenyl synthases signature 1. 152 168 IPR033749 -
Gma16g01298 367 ProSitePatterns Polyprenyl synthases signature 2. 285 297 IPR033749 -
Gma16g01298 367 CDD Trans_IPPS_HT 99 365 IPR000092 GO:0008299
Gma16g01298 367 SFLD Polyprenyl Transferase Like 79 365 - -
Gma16g01298 367 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 31 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01298 Gma-Chr16 31605435 31607112 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01298 K13789 - gmx:100785539 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01298 16 31605435 31607112 Gma16g01298 16 31605435 31607112 ECH
Gma02g00537 02 5332989 5334509 Gma16g01298 16 31605435 31607112 ECH
Gma16g01298 16 31605435 31607112 Gma02g00537 02 5332989 5334509 GST
Gma01g01816 01 53761958 53762968 Gma16g01298 16 31605435 31607112 PCT
Gma11g00586 11 4899703 4901105 Gma16g01298 16 31605435 31607112 PCT
Gma16g01298 16 31605435 31607112 Gma01g01816 01 53761958 53762968 PCT
Gma16g01298 16 31605435 31607112 Gma11g00586 11 4899703 4901105 PCT