Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma01g01816 ATGGCCACGTCCCACATCTATGCTAAGGAAACCAAAACTAAGGAATACACAGTGACAACCGAGGAAATTGAACTTGAAGATGCGCTCAACTTCGACTTCAAGGCTAGAATGCTCGCCAAGGCCCACACAGTGGACGCAGCCATTACGCTGAAGGACCCACACAAGATCCACCAAGCCATGCGCTACTCCCTCCTCGCCGGCGGCAAGAGGGTCCACCCGCTACTCTGCATCGCCGCCTGCGAGCTCCTCGACGGCACCGAGGCCACCGCCCTCCCCGCCGCGTGCGCCGTTGAGATGATCCACACCATGTCGCTCATCCACGACGACTTGCACTGTATGGACAACGATGACCTCCGCCGCGGAAAGCCGACCAACCACAAGGTCTTCGGCGAGGACGTGGCGGCGTCCACGAAGGGCGTGTCGCCGTCACGGGTGGTTCGCGCGATTGGGGGAACGTTGTTGGAAGTTGCGGCTGTGTTGGGGGTATTAGTGGGAAGTGGAACCGACGAGGAGGCTGAGAGATTAAGGAGGTTCGCTAGGTGCATTGGGTTGTTGTACCAGGTTGTCGATGATATTATAGATGTTACGAAATCGTCCGAGGAATTGGGAAAGACGGCGGGAAAGGATTTGGTGGCTCATAAGGTTACTTATCCCAAGCTTTTGGGGATACATAAGTCTAAGGAGTTTGCTGGAAAATTGATGCAGGATGCCAAGGAACAATTGTGTGGGTTCGATCCCCAAAGGCGGGCTCCGTTATTTGCTTTAACCAATTACATTGCTCAGAGCCCAGAGGCAACATTGTATTCTCTGGTTTCTTCTTGCACAACTTCAGCTTTTTACACAATTTTAAGAATACCAGAATTTATTGCTAACTACTTTAATTAG 885 0.5243 MATSHIYAKETKTKEYTVTTEEIELEDALNFDFKARMLAKAHTVDAAITLKDPHKIHQAMRYSLLAGGKRVHPLLCIAACELLDGTEATALPAACAVEMIHTMSLIHDDLHCMDNDDLRRGKPTNHKVFGEDVAASTKGVSPSRVVRAIGGTLLEVAAVLGVLVGSGTDEEAERLRRFARCIGLLYQVVDDIIDVTKSSEELGKTAGKDLVAHKVTYPKLLGIHKSKEFAGKLMQDAKEQLCGFDPQRRAPLFALTNYIAQSPEATLYSLVSSCTTSAFYTILRIPEFIANYFN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma01g01816 294 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 21 136 - -
Gma01g01816 294 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 151 262 - -
Gma01g01816 294 Gene3D Farnesyl Diphosphate Synthase 40 137 IPR008949 -
Gma01g01816 294 Pfam Polyprenyl synthetase 55 134 IPR000092 GO:0008299
Gma01g01816 294 Pfam Polyprenyl synthetase 151 229 IPR000092 GO:0008299
Gma01g01816 294 Gene3D Farnesyl Diphosphate Synthase 142 267 IPR008949 -
Gma01g01816 294 CDD Trans_IPPS_HT 56 259 IPR000092 GO:0008299
Gma01g01816 294 ProSitePatterns Polyprenyl synthases signature 1. 105 121 IPR033749 -
Gma01g01816 294 ProSitePatterns Polyprenyl synthases signature 2. 182 194 IPR033749 -
Gma01g01816 294 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 7, CHLOROPLASTIC 21 136 - -
Gma01g01816 294 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 7, CHLOROPLASTIC 151 262 - -
Gma01g01816 294 SUPERFAMILY Terpenoid synthases 51 245 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma01g01816 Gma-Chr1 53761958 53762968 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma01g01816 K13789 - gmx:100778289 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma01g01816 01 53761958 53762968 Gma01g01816 01 53761958 53762968 ECH
Gma11g00586 11 4899703 4901105 Gma01g01816 01 53761958 53762968 ECH
Gma01g01816 01 53761958 53762968 Gma11g00586 11 4899703 4901105 GST
Gma01g01816 01 53761958 53762968 Gma16g01298 16 31605435 31607112 PCT
Gma01g01816 01 53761958 53762968 Gma02g00537 02 5332989 5334509 PCT
Gma16g01298 16 31605435 31607112 Gma01g01816 01 53761958 53762968 PCT
Gma02g00537 02 5332989 5334509 Gma01g01816 01 53761958 53762968 PCT