Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00215 ATGTTTTATTCTAAAACCTTTTGTGCACCGCATCATCAGCCTTACAAAAATATGCAAATGTTCAAAACATTCACATCGggaagcggcgagtacttcacgcgcctcggcgtgggaacccctccgaagtacctctacattgtcctcgacacgggaagcgacgtcgtttggctccaatgcaagccctgcaccaaatgctactcccaaaccgaccaaatctttgacccatcaaaatcGAAAACCTTCGCCGGAATCCCCTGCTCCTCCCCTCTCTGCCGCCGCCTCGACTCACCGGGATGCAATACAAAAAACAACCTTTGCCAGTACCAGGTTTCCTACGGAGACGGTTCTTTCACTGTCGGAGATTTCTCAATAGAAACTCTCACGTTCCGACGCGCCGAAGTCCCGCGCGTGGCCCTCGGATGCGGTCACGACAACGAGGGACTTTTCGTGGGCGCCGCAGGTTTGTTGGGCCTAGGTCGCGGCGGGTTGTCGTTTCCTACCCAGACCGGAACCCGGTTCAATAACAAATTCTCTTACTGTTTAACAGACCGAACCGCTTCCGCTAAACCGTCTTCCGTTGTGTTCGGCGACTCGGCTGTCTCTCGAACCGCCCGGTTCACTCCTTTGGTTAAAAACCCTAAGCTTGATACGTTTTATTATGTTGAGCTTCTCGGGTTTAGTGTTGGCGGCGCGCCGGTTCGGGGGATTTCGGCTTCACTTTTTCGGCTCGACTCCACCGGGAACGGGGGTGTTATAATTGACTCAGGGACTTCCGTCACGCGCCTCACGCGCCCTGGTTATGTGGCGTTAAGAGACGCGTTTCGGGTCGGGGCTTCACATTTGAAGCGCGCGTCTGAGTTTTCGCTTTTTGACACGTGCTATGATCTTTCGGGGCTGTCGGAGGTTAAGGTTCCGACCGTGGTACTGCATTTTCGGGGTGCTGACGTGTCACTGCCGGCGTCGAATTATCTCATTCCGGTGGATAATGACGGGACTTTTTGTTTTGCGTTTGCCGGAACGATGAGTGGGTTGTCTATTGTTGGGAACATTCAGCAGCAAGGGTTTCGGGTTGTGTTCGATTTGGCGGGTTCTCGGGTCGGGTTTGCCCCGAGAGGGTGCGCGTGA 1125 0.4622 MFYSKTFCAPHHQPYKNMQMFKTFTSGSGEYFTRLGVGTPPKYLYIVLDTGSDVVWLQCKPCTKCYSQTDQIFDPSKSKTFAGIPCSSPLCRRLDSPGCNTKNNLCQYQVSYGDGSFTVGDFSIETLTFRRAEVPRVALGCGHDNEGLFVGAAGLLGLGRGGLSFPTQTGTRFNNKFSYCLTDRTASAKPSSVVFGDSAVSRTARFTPLVKNPKLDTFYYVELLGFSVGGAPVRGISASLFRLDSTGNGGVIIDSGTSVTRLTRPGYVALRDAFRVGASHLKRASEFSLFDTCYDLSGLSEVKVPTVVLHFRGADVSLPASNYLIPVDNDGTFCFAFAGTMSGLSIVGNIQQQGFRVVFDLAGSRVGFAPRGCA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00215 374 Gene3D Acid Proteases 9 194 IPR021109 -
Gma16g00215 374 CDD cnd41_like 30 373 IPR033873 -
Gma16g00215 374 PRINTS Pepsin (A1) aspartic protease family signature 345 360 IPR001461 GO:0004190|GO:0006508
Gma16g00215 374 PRINTS Pepsin (A1) aspartic protease family signature 251 262 IPR001461 GO:0004190|GO:0006508
Gma16g00215 374 PRINTS Pepsin (A1) aspartic protease family signature 37 57 IPR001461 GO:0004190|GO:0006508
Gma16g00215 374 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 23 373 - -
Gma16g00215 374 Pfam Xylanase inhibitor C-terminal 219 369 IPR032799 -
Gma16g00215 374 Gene3D Acid Proteases 195 374 IPR021109 -
Gma16g00215 374 PANTHER ASPARTYL PROTEASES 23 373 IPR001461 GO:0004190|GO:0006508
Gma16g00215 374 Pfam Xylanase inhibitor N-terminal 31 197 IPR032861 -
Gma16g00215 374 ProSiteProfiles Peptidase family A1 domain profile. 31 369 IPR033121 -
Gma16g00215 374 SUPERFAMILY Acid proteases 26 373 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00215 Gma-Chr16 2341272 2344151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00215 29 373 Miscellaneous Gene Families AT1G77480 27.778 7.17e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00215 K22683 - gmx:100808163 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00215 16 2341272 2344151 Gma16g00215 16 2341272 2344151 ECH
Gma07g00516 07 4960125 4961794 Gma16g00215 16 2341272 2344151 GST
Gma19g02415 19 52638712 52640453 Gma16g00215 16 2341272 2344151 PCT
Gma09g00347 09 3275571 3282704 Gma16g00215 16 2341272 2344151 PCT
Gma16g00215 16 2341272 2344151 Gma19g02415 19 52638712 52640453 PCT
Gma16g00215 16 2341272 2344151 Gma09g00347 09 3275571 3282704 PCT