Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00424 atgagtgacgaaggagaaaggacttgtcctctctgtgctgaagagatggatttgacagatcagcagttgaaaccatgcaaatgtggttatgagATATGTGTCTGGTGTTGGCATCACATACTGGAAATGGCTGAGAAGGATGACACAGAGGGACGATGTCCTGCATGTCGTTCTCCATATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAAAAAGATGAAGAACCAGAAAGCAAAGTCAAAATCTTCTGAAGCACGGAAGCAACTCAGTAGTGTGCGAGTAATTCAGCGGAACCTGGTTTACATAGTGGGATTGCCTCTCAATCTGGCAGACGAAGATCTCCTCCAGCAGCGAGAATATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTCGAACCACAGCTGGTGTTGTTCAGCAGTTTCCAAACAATACATGTAGTGTATATATTACTTATTCAAAAGAAGAAGAAGCAATTCGATGCATTCAAAATGTGCATGGATTCGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACTAAATATTGTCATGCATGGCTCAGAAACATGCCTTGCAGCAATCCAGATTGTCTATATCTGCATGGGATTGGCTCTCATGAGGATAGTTTCACAAAAGATGAAATAGTTTCAGCATACACTAGAAGTCGTGTTCAACAAATTACTGGTGCTGCATACAATATGCAACGGCAATCAGGGAATGTATTGCCTCCTCCATTGGATGATTGCACGGATAATTCATCAGGAAAATCAATTGTGAAAAATTCATCAAGTACCTCTGTTAGCATTGTAAGAGGTTCACCTCCTAATGGAACTTCTGGGAGACCTATAGCTCTTTCTGCAGCTGCAGCATGGGGTATACGGGCTACAAATTGTCAGCCAGCTGCTTGTGGTTTATTATGTCCAAATGGACTGTCCAAGCTTAAACCTGATACAATCAGCAGCACCCTACCCTTTTCCTCTGCTGTTGCATGCACTATTCAGGCTTCATTAAATAGTGATGTTACAAAGAGGCCACTGTCGAGTGATGGGAGTCATAGTATGACACCTCAAGTAAAAAATGAATTATTGAAACCTGTTAAACAAAATAGAAGCATGGATATCCTGGATAGTGCTGAAGAAAGAACTTTGGCTTCTGAAGTTTCTCTTTCACCCATGAAATTGAACAATCAGGTGTCTTCTCTACCATTAGCCGGATATAGTGATAGAGGCAGCTTTACTGCAACAAACACAACTAATTCTATTGACATCACTCGACAACCAAGCAGCATTGGTCCTGAGGAAGCAGTTATTTCTACCAGTGAAGAGATTGAGAATTTTTCCCAGGAGTTGTCTTCTGTTCACATTGATAGAAATTCCCAAAATAAACAACATTACAGCCTATCCAAAACTAGCAGATCACCTGATAATGTGTTGGTTAAATCTATGCAATCTCAAGAATCACAGTATAATACTGACAAATTTAAAGATGTACTAATTAAAAATGCAGACAGTAAAGCTGCTGCATTAGAAAATGAGGTTTGTAATTTAAAGCAACAATGTGATTTGTCATTGGATTCTCAATCTCAATCTCAAGTAGTATCAGCTAATATTGAAGTGGAAGATGATGTAACAACTTTTGATAATCAGATACTTAAGGATCCAGAAGTTGTTGGTTCTTATTTGCCCGAATCGGCCAGTTTCCTTAATGTCTCAAATCATTCTAGTCCTCATCTTCTGCATTGTGGTGAACCATGTAATGTTGTAAATGCTGGTTCTTTAGATGCCAATGATAAAATCAAGGATAACTCATTATTACATGCACATAACTTTTGCAATGAATATTCTGATAAATTGATCAGCACCAGCTCTTATGGGTTCCTCCATGATGCAAGAAATGAGCAACGCATTGGAAGATTAGTTAGTGATGCAGTTAATATTGGAAGTGACGCCGCTATGGACAAGGGTGAAAGCAGTATAATTTCAAATATATTATCCATGGAGTCTGATGCCTGGGATGACTCGCTAACATCACATGAGAGTTTGGCCAAGTTGTTGGGTGACAACACTGACAACCAGAATGGTCCTTTAAAAAAATCTAGTTCTTGGAAAGTTCAAAGTAACAATCAATCTAGATTTTCTTTTGCAAGACAGGAGGAATCCAAATTCCAAGCTAATGTACATCCATCTTCTGGTGCCAACCAGCAATTTCCAAAGAATGGCTCACTCATCCAGGATTTTGTGGAAAGAGACTTTTCTTTGGACAAGCTGGGTTTTGCAAATGGCATCCCCTCCAATAACCTCGAGGAATCTGGAAATCTTGGTAGTGGCCATTTTATTGCTTCAAACAATAAACTTTCAGCTGTTTCAAGAGCACAAATTTCAGCACCACCAGGATTTTCTGTTCCGAACAGGGCACCACCTCCTGGTTTTTCTTCCCTTGAGAGAATGGGGCAGGCTTTTGACTCCCTCTCTGGGAATTCATTGCTCGACCCTTCTTTCTTACTGAGAAATTCATATCAAACACCCTCAAATGGAAATATTGGTGATCCAGGAGACATTGAATTTATGGATCCTGCTATTTTGGCAGTTGTTAAAGGGAGAATTCAAGGTGCACAAAACAGCCCAGTGCTGGATATGCGATCCAATTACCCTGAACAGTTAAATTACTTTGAAAATGAGGCTAGAGTTCAATTATTGATGCAAAGATCTCTCTCACCACATCAAAACCTTCGATTTTCTGAAATTGGGAATTCCTTTTCTCAGTTTGGTGATTCTTATGGCATTTCTTCAAGGTTAAATCAATCACAAGTTAGTAATCTGGCTTCATTTCCTCAGTTGTCTCTGCAGCAGTCTAGAAATGCAATCTTGTCAAATGGCCAATTGGATGGGTGGAATGAAGTGCCGAGTGGAAATGGACATTTGGGATTTGAGATTGTTGGGTATATTGGCCATGGTAAAGCTAAGTCAGAAATATACAAACAGAATTTTTCTGCATTGTCGAAGGTGATGGGGCTGGCTCATGACATAACCTGTCTATTAGGCTATGAAATGATGAAACTCTCAAGAAGGGCTATAGCTGCAGCTGTTCTTGATTTGCGGAAGCAAACCGCGTTGAGATTTAAGAAATCAATCATGGATCTGAAAGTGGTCTATTTGGCAGaggagcaaatgactaggtga 3228 0.3848 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILEMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAEVHMEKKMKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLNLADEDLLQQREYFGQYGKVLKVSMSRTTAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHGIGSHEDSFTKDEIVSAYTRSRVQQITGAAYNMQRQSGNVLPPPLDDCTDNSSGKSIVKNSSSTSVSIVRGSPPNGTSGRPIALSAAAAWGIRATNCQPAACGLLCPNGLSKLKPDTISSTLPFSSAVACTIQASLNSDVTKRPLSSDGSHSMTPQVKNELLKPVKQNRSMDILDSAEERTLASEVSLSPMKLNNQVSSLPLAGYSDRGSFTATNTTNSIDITRQPSSIGPEEAVISTSEEIENFSQELSSVHIDRNSQNKQHYSLSKTSRSPDNVLVKSMQSQESQYNTDKFKDVLIKNADSKAAALENEVCNLKQQCDLSLDSQSQSQVVSANIEVEDDVTTFDNQILKDPEVVGSYLPESASFLNVSNHSSPHLLHCGEPCNVVNAGSLDANDKIKDNSLLHAHNFCNEYSDKLISTSSYGFLHDARNEQRIGRLVSDAVNIGSDAAMDKGESSIISNILSMESDAWDDSLTSHESLAKLLGDNTDNQNGPLKKSSSWKVQSNNQSRFSFARQEESKFQANVHPSSGANQQFPKNGSLIQDFVERDFSLDKLGFANGIPSNNLEESGNLGSGHFIASNNKLSAVSRAQISAPPGFSVPNRAPPPGFSSLERMGQAFDSLSGNSLLDPSFLLRNSYQTPSNGNIGDPGDIEFMDPAILAVVKGRIQGAQNSPVLDMRSNYPEQLNYFENEARVQLLMQRSLSPHQNLRFSEIGNSFSQFGDSYGISSRLNQSQVSNLASFPQLSLQQSRNAILSNGQLDGWNEVPSGNGHLGFEIVGYIGHGKAKSEIYKQNFSALSKVMGLAHDITCLLGYEMMKLSRRAIAAAVLDLRKQTALRFKKSIMDLKVVYLAEEQMTR 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00424 1075 SMART rrm2_1 111 192 IPR003954 GO:0003676
Gma15g00424 1075 SUPERFAMILY RING/U-box 3 66 - -
Gma15g00424 1075 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Gma15g00424 1075 CDD RRM_CNOT4 105 204 IPR034261 -
Gma15g00424 1075 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 988 - -
Gma15g00424 1075 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Gma15g00424 1075 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Gma15g00424 1075 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Gma15g00424 1075 Gene3D - 111 192 IPR012677 -
Gma15g00424 1075 SMART rrm1_1 111 192 IPR000504 GO:0003723
Gma15g00424 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Gma15g00424 1075 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Gma15g00424 1075 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Gma15g00424 1075 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 988 IPR039780 GO:0004842|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00424 Gma-Chr15 3601350 3615154 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00424 K10643 - gmx:100796804 1932.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00424 15 3601350 3615154 Gma15g00424 15 3601350 3615154 ECH
Gma13g02938 13 43939036 43949538 Gma15g00424 15 3601350 3615154 GST
Gma15g00424 15 3601350 3615154 Gma11g01331 11 11523749 11529682 PCT
Gma12g00652 12 5487782 5495855 Gma15g00424 15 3601350 3615154 PCT