LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma13g02938	ATGTTGGCGATGGAATGGAGATCAACGTGGCTTTCGATGGTGGCATGTCCCTTGAAGGGAAGAAGACCCAACTTGGGGTGTGTAGAAACATGCTTAAAAGGggcaatcatgagtgacgaaggagaaaggacttgtcctctctgtgctgaagagatggatttgacagatcagcagttgaaaccatgcaaatgtggttatcagATATGTGTCTGGTGTTGGCATCACATACTGGAAATGGCTGAGAAGGATGACACAGAGGGACGATGCCCTGCATGTCGTTCTCCATATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAAAAAGGTGAAGAACCAGAAAGCAAAGTCAAAATCTTCTGAAGCACGGAAGCAGCTCAGTAGTGTGCGAGTAATTCAGCGGAATCTGGTTTACATAGTGGGATTGCCTCTCAATCTGGCAGACGAAGATttcctccagcagcgagaatattttggtcagtatggaaaggtcttaaaagtgtcaatgtctcggactacagctggtgttgttcagcagtttccaaacaatacatgtagtgtatatattacttactcgaaggaagaagaagcaattcgatgcattcaaaatgtgcatggattcgttttggagggtagacctttaagGGCTTGTTTTGGAACCACTAAATATTGTCATGCATGGCTCAGAAACATGCCTTGCAGCAATCCAGATTGTCTATATCTTCATGAGATTGGCTCTCAAGAGGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGaagtcatgttcaacaaattactgGTGCTGCAAACAATATACAACGACAAGCAGGGAATGTATTGCCTCCTCCATTGGATGATTGCATGGATAATTCATCAGGAAAACCAATTGTGAAAAATTCATCAAGTACCTCTGTTAGCATTGTAAGAAGTTCACCTCCTAATGGAACTTCTGGGAGACCTATAGCTCTTTCTGCGGTTGCATGGGGTACACGGGCTACAAATTGTCAGCCAGCTGCTGATGGTTTATTATGTCCAAATGGACTGTCCAGGCCTAAACCTGATACAATCAGCAGCAGCCTACCCTTTTCCTCTGCTGTTGCATGCACAATTCAGGCTTCATTAAATAGTGATGTGACAAAGAGGCCACTGTTGAGTGATGGGAGTCGTAGTATGACACCTCAAATAAAAAATGAATTATTGAAACCTGTTGAACAAAATAGAAGCATGGATATCCTGGATAGTGCTGGTGAAAGAACTTTGGTTTCTGATGTTTCTCTTTCAGCTGTTAAATTGAACAACCAGTTGTCTTCTCTACCATTAGCCGGAGATAGTGGTAGAGGCAGCTTTACTGCAACTAACACAACTAGTTCAATTGACATCACTCGACAACCATTAAGCTTTGGTCCTGAGGAAGCAGTTATATCTACCTGTGAAGAGATTGAGAATTTGTCCTGCGAGTTTTCTTCTGTTTACATTGATAGAAATGCCCAAAATAAACACTACAGCCTATCCATACCTAGCAGCTCACCTGATAATGTGTTGGTTAAATCTATGCAATCTCAAGAATTGCAGTATAATACTGACAAATTGAAAGATTTAATGATTAAAAATGCAGACAGTAAAGCTGCTGCATTATATAATGAGGTTTGTAATTTAAAGGAACAGTGTGATTTGTCATTGGATTCTCAATCTCAAGTAGTATCAGCTAATACTGAAGTGGAAGATGATGTAACAACTTTTGATAATCAGAGACTTAAGGATCCAGAAGTTATTGGTTCTTATTTGCCCGAGTCAGCCAGTTTCCTTCATGTCTCAAATCATTCTAGTCCTCTTCTTCTGCAGCGTGGTGACCCATGTAATGTTGTAAATGCTGGTTTTTTAGATGCCAATGATAAAGTTGAGGATAACTCACTATTACATGCACATAACATATGCAATGGATATTCTGATGAGATCAGTACCAGTTCTTATTGGTTCCGCCATGATGCAAGCAATGAGCACCACATTGGAAGATTAGTTAGTGATGCAGTTAATATTGGAAGTGATGCTGTTATGGACAAGGGTGAGAGTAGTATAATTTCAAATATATTATCGATGGAGTTTGATGCCTGGGATGACTCGCTGGCATCACATGAGAGTTTGACCAAGTTGTTGGGTGACAACACTGACAGCCAGAATGGTCCGTTAAAAAAATCTAGTTCTAGGAAAGTTCAAAGTAACAATCAATCAAGATTTTCTTTTGCATGGCAGGAGGAATCCAAATTCCAAGCCAATGTACCTCCATCTTCTGGTGCTACCCAGCCATTTCCAAAGAATGGCTCACTCATCCAGGATTTTGTGGAAAGAGACTTTTCTTTGAACAAGCTGGGTTTTGCAAATGGCTTCCCCTCCAATAACCTCAAGGAATCTGGAAATCTTGGCAGTGGTCATTTCATTGCTTCAAACAATAAGCTTTCAGCTGTTTCAAGAGCACAAATTTCAGCACCGCCAGGATTCTCTGTTCCGAACAGGGCACCACCTCCTGGTTTCTCTTCAGTTGAGAGAATGGGGCAGGCTTTTGACTCCCTCTCTGGGAATTCATTGCTGGACCCTTCTTTCTTACTGAGAAATTCTTATCAAACACCCTCAAATGGAAATATTGGTGGTCCAGGTGACGTTGAATTTATGGATCCTGCTATTTTGGCAGTTAGTAAAGGCCCTGAACAGTTTAACTACTTTGAAAATGAGGCCAGAGTTCAATTATTGATGCAAAGATCTCCCTCACCACAGCAAGACCTTCGATTTTCTGAAATTGGGAATTCCTTTTCTCAGTTTGGTGATTCTTATGGCATTTCTTCAAGGTTAAATCAATCACAAGTTAGTAATCTGGCTTCATTTCCTCAGTTATCTCTGCAGCAGTCTAGAAATGCAGTCTTGTCAAATGGCCAATTGGATGGGCGGAATGGAAATGGACATTTGGGATTTGAGATTGTTGGGTATATTGGCCATGGTAAAGCCAAGTCAGAAATAAACAAACAGAATTTTTCTGCATTGCCAAAGGTGATGGGGATGGCTCATGACATAACCTGTCTATTGGGCTACGAAAGGATGAAACTCTCGCTTATAGCTGCAGCTGGTTACTGTTCTTGA	3171	0.3693	MLAMEWRSTWLSMVACPLKGRRPNLGCVETCLKGAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHILEMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAEVHMEKKVKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLNLADEDFLQQREYFGQYGKVLKVSMSRTTAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSHVQQITGAANNIQRQAGNVLPPPLDDCMDNSSGKPIVKNSSSTSVSIVRSSPPNGTSGRPIALSAVAWGTRATNCQPAADGLLCPNGLSRPKPDTISSSLPFSSAVACTIQASLNSDVTKRPLLSDGSRSMTPQIKNELLKPVEQNRSMDILDSAGERTLVSDVSLSAVKLNNQLSSLPLAGDSGRGSFTATNTTSSIDITRQPLSFGPEEAVISTCEEIENLSCEFSSVYIDRNAQNKHYSLSIPSSSPDNVLVKSMQSQELQYNTDKLKDLMIKNADSKAAALYNEVCNLKEQCDLSLDSQSQVVSANTEVEDDVTTFDNQRLKDPEVIGSYLPESASFLHVSNHSSPLLLQRGDPCNVVNAGFLDANDKVEDNSLLHAHNICNGYSDEISTSSYWFRHDASNEHHIGRLVSDAVNIGSDAVMDKGESSIISNILSMEFDAWDDSLASHESLTKLLGDNTDSQNGPLKKSSSRKVQSNNQSRFSFAWQEESKFQANVPPSSGATQPFPKNGSLIQDFVERDFSLNKLGFANGFPSNNLKESGNLGSGHFIASNNKLSAVSRAQISAPPGFSVPNRAPPPGFSSVERMGQAFDSLSGNSLLDPSFLLRNSYQTPSNGNIGGPGDVEFMDPAILAVSKGPEQFNYFENEARVQLLMQRSPSPQQDLRFSEIGNSFSQFGDSYGISSRLNQSQVSNLASFPQLSLQQSRNAVLSNGQLDGRNGNGHLGFEIVGYIGHGKAKSEINKQNFSALPKVMGMAHDITCLLGYERMKLSLIAAAGYCS	1056

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma13g02938	1056	Pfam	RING/Ubox like zinc-binding domain	45	97	-	-
	Gma13g02938	1056	CDD	mRING-HC-C4C4_CNOT4	45	94	IPR039515	-
	Gma13g02938	1056	CDD	RRM_CNOT4	141	240	IPR034261	-
	Gma13g02938	1056	SUPERFAMILY	RING/U-box	35	102	-	-
	Gma13g02938	1056	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN	30	998	-	-
	Gma13g02938	1056	ProSiteProfiles	Zinc finger RING-type profile.	45	93	IPR001841	-
	Gma13g02938	1056	MobiDBLite	consensus disorder prediction	732	756	-	-
	Gma13g02938	1056	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	146	232	IPR000504	GO:0003723
	Gma13g02938	1056	PANTHER	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	30	998	IPR039780	GO:0004842\|GO:0030014
	Gma13g02938	1056	MobiDBLite	consensus disorder prediction	312	331	-	-
	Gma13g02938	1056	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	35	113	IPR013083	-
	Gma13g02938	1056	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	148	226	IPR000504	GO:0003723
	Gma13g02938	1056	SMART	rrm2_1	147	228	IPR003954	GO:0003676
	Gma13g02938	1056	Gene3D	-	147	228	IPR012677	-
	Gma13g02938	1056	SUPERFAMILY	RNA-binding domain, RBD	140	226	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma13g02938	Gma-Chr13	43939036	43949538	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma13g02938	K10643		-	gmx:100805811	1919.82

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma13g02938	13	43939036	43949538	Gma13g02938	13	43939036	43949538	ECH
	Gma13g02938	13	43939036	43949538	Gma15g00424	15	3601350	3615154	GST
	Gma13g02938	13	43939036	43949538	Gma11g01331	11	11523749	11529682	PCT
	Gma12g00652	12	5487782	5495855	Gma13g02938	13	43939036	43949538	PCT