Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00652 ATGGAACTAAATTCTTTTGATTTTTGCCCCCGTATCCCGCACCAAAAACTTGTCCGCAAGAACATTCGTAGGATCGAAGGACTAGCCACGTGTCGCGCATCCAAAACCCCACACACGGAGGAGCAAGGAGTACGTGTACCGCAGGAACCCCTAACACTGGAACCAGTTGGGGGGGTGCCGGACAAAACAAAACAAAAACATAAGGGAGAGAAGAGCGACGCGCAAGAGATAGAGATAGAGAGCCAAAAGCCGAAAACGCCATCATCCAAACAGGGCCTTTCTCTCTCTTTTAAAATACACATTTTCTCTGCCCCTCTTAACTTTTCGCCCTCTCTCTCTCTCCGCCCTCGCAACACAATCTCCTCCTCACAGTTTCGTCTTCTCGATCTCACCACTgcaatcatgagtgacgaaggagaaagaacttgtcctctctgtgctgaagagatggatttgacagatcagcagttgaagccttgcaaatgcggttatgagATCTGTGTCTGGTGCTGGCACCACATAATGGACATGGCTGAGAAGGATGACACTGAGGGGCGATGCCCTGCATGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGACGGCTGCAAACTGTGAGAGATTGGTGAATGGAATTAATATGGAGAAAAAGATGAAGACTCAGAAAGCGAAGTCTAAATCATCTGATGGGCGCAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGGTTGCCTCTCAATCTTGCAGATGAAGATcttcttcagcggagagagtattttgctcagtatgggaaggtcttaaaagtgtcaatgtctcgaacagcagctggtgtaattcaacagtttccgaatgatacttgtagtgtatatataacttattcaaaggaagaggaagcggtttgttgtattcaaaatgtacatggatttgttttggagggtagacctttaagGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATGTGCCTTGCAGCAATCCGGATTGTCTATATTTGCATGAGATTGGCTCCCAAGAAGATAGTTTTACCAAGGATGAAATAATTTCAGCATACACTAGAAGTCGAGTTCAACAAATCACTGGTGCCACAAACAATATGCAACGGCGGTCAGGGAATGTATTACCTCCTCCACTGGATGATAATATGAATAGTTCATCTGTAAAGCCTATTGTTAAAAATTCTTCTTGTAACTCTGTTAACATTGTAAGAGGTTCACCTCCAAATGGAATATATGGGAAAAATATGGCCCTTCCTGCTAGTGCTGCATGGGGTACTCAGGCCTCAAATTGTCAGCCCCCTGCTGGAGGTCTATCATATCCAAATGGGCCATCCAAGCCGAAACCTGATACAGGCTGCAGCACACTAGCATTTTCTGCTGCTGTTACAGGCTCAATTCAGGCTTCTGATGTTACAAAGAGGCCACCATCAAGTGATGGGTGCCATAGTATGACACCTACAGTGAAAAGTGAATTGTTGAAACCTGTTAAACAATATAACAATAGCGTGGGCAGTCTGGTTAGTGCAGGAGAAAAAACTTCAGCTTCTGATGTTTCTCCTGTGCTCGTGAATTTGAACAGCCAGTTGTCTTCTCTACCGTTGTCCCGAGATAGTGATGGCAATTGTACTACAGCAAACACAATATATTCTACTAACATGACTGGACAGTCTTGTAACTCTGGTCCTGAGGAAGCAATGACTGCTACCAATGAAGAGATTCAGAATTTGTCCAATGAGTTGTCCTCAATTAACATTGATAGAAATGCCGAACATTGCGGTATAACCAAACCTAATAGCCCGCCTACTGATCATGCATTGGTTAAATCCCCTCAAATTCAAGGATCAAAATATAATGTTGACAGATTTAGAGATGTGATAACTACAAATGTGACTGGTAAAGCTACCTTGAATAATGTGGCCTGTAATTCTAGGGAACAGTGTGATTGGAAATTGGATTCTCAATCTCTAGTATCAGATACTGCTGAAATTGATGATGATGTGACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTGTTTGCCGTTCTTATTTGCCAAAGTCAACCAGTTTCCTTCATGCATCAAACCATTCTAGCCCTTGTCTTCTGCAGCATGGGGAACTTTGTACTGCCATAAATGCAGGTTCTGTATCTGCTGATGATAGAGTTCAAAATGAATCTATGTTACATGCATCCAATATATTATGTAATGGCCACCCGGAAAAATTGGTCAGCAGCAGCTCCTATGGTCTGCTTCACGATGAAAGAAATGGGCATATCATTCAAAGATTAGTCGGTGATGATGTTAATTTTGGGCATGATGTTGCTAGGGATAAGGGTGAAAGTAGTATAATTTCAAATATATTGTCCATGAATTTTGATACCTGGGATGACTCACTAACATCACCTCATAATTTAGCTAAGTTGTTGGGTGACAATACTGATAACCGGTCTGGTCCTTTAAACAAATCTAGTTCTTGGAAAGGTAATGGTAACAATCAATCAAGGTTCTCTTTTGCGAGGCAAGAGGAATCCAAAATCCAAATGTTTGATGCACATGCATCTTATGGTGTCAGCCATCAACGGCCAAACCATACAGTCTTCCAGAATTTTGCAGAAAGAGACTTGTATATGGATAAGTTGGGCATTGCAAATGGATTTTCTACCGGTAACTTTGAGGAAGCTGATAATTTGGTCAGTGGTCATCCCATTGCATCTTCTAATAAGTTTTCTGCCATTTCAAGAGCACAAGTTTCAGCCCCACCAGGATTTTCCATTCCAAGCAGGCTGCCACCACCTGGGTTTTCTTCCCATGAGAGAGTGGAGCAGGCTTTTGACTCCATTTCTGGGAATTCTTTGCTTGACCATTCTTCCCTATTGAGAAATTCATATCAGACACCTTCAGCTGGAAACCTTGGTAGTGCAGGGGACATTGAATTTATGGACCCTGCTATTTTGGCAGTTGGCAAAGGGAGACTTCAAGGTGCACTGAACAGCCCGGCACTGGACATTCGATCTAATTTCATGCCACAATTAAATTACTTCGAAAATGATGCCAGACTACAATTATTGATGCAAAGATCTCTCGCACCACAGCAAAACCTTAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTTGGCGATTCCTATGCTGTTTCTTCAAGGTTAGATCAATCCCAAGTCAGTAATCTAGGCCCATTCCAACAGCTGTCTCTGCAGCAGTCTACAAATGCAGTCTTGTCAAATGGGCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAATGGTTTGGGTGTGGCTGAGCTTTTGAGAAATGAAAGACTTGGATTCAATAAATTTTATTCAGGATATGATGATTCAAAATTTCGGATGCCAAATTCTGGGGATCTTTACAACAGAACATTCGGGATGTGA 3471 0.3898 MELNSFDFCPRIPHQKLVRKNIRRIEGLATCRASKTPHTEEQGVRVPQEPLTLEPVGGVPDKTKQKHKGEKSDAQEIEIESQKPKTPSSKQGLSLSFKIHIFSAPLNFSPSLSLRPRNTISSSQFRLLDLTTAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGTAANCERLVNGINMEKKMKTQKAKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFAQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAVCCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRRSGNVLPPPLDDNMNSSSVKPIVKNSSCNSVNIVRGSPPNGIYGKNMALPASAAWGTQASNCQPPAGGLSYPNGPSKPKPDTGCSTLAFSAAVTGSIQASDVTKRPPSSDGCHSMTPTVKSELLKPVKQYNNSVGSLVSAGEKTSASDVSPVLVNLNSQLSSLPLSRDSDGNCTTANTIYSTNMTGQSCNSGPEEAMTATNEEIQNLSNELSSINIDRNAEHCGITKPNSPPTDHALVKSPQIQGSKYNVDRFRDVITTNVTGKATLNNVACNSREQCDWKLDSQSLVSDTAEIDDDVTSFDNQRLKDPEVVCRSYLPKSTSFLHASNHSSPCLLQHGELCTAINAGSVSADDRVQNESMLHASNILCNGHPEKLVSSSSYGLLHDERNGHIIQRLVGDDVNFGHDVARDKGESSIISNILSMNFDTWDDSLTSPHNLAKLLGDNTDNRSGPLNKSSSWKGNGNNQSRFSFARQEESKIQMFDAHASYGVSHQRPNHTVFQNFAERDLYMDKLGIANGFSTGNFEEADNLVSGHPIASSNKFSAISRAQVSAPPGFSIPSRLPPPGFSSHERVEQAFDSISGNSLLDHSSLLRNSYQTPSAGNLGSAGDIEFMDPAILAVGKGRLQGALNSPALDIRSNFMPQLNYFENDARLQLLMQRSLAPQQNLRFSEIGNTFSQLGDSYAVSSRLDQSQVSNLGPFQQLSLQQSTNAVLSNGQWDGWNEVQSGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLYNRTFGM 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00652 1156 MobiDBLite consensus disorder prediction 484 506 - -
Gma12g00652 1156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 211 IPR013083 -
Gma12g00652 1156 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 129 1156 - -
Gma12g00652 1156 Gene3D - 245 326 IPR012677 -
Gma12g00652 1156 Pfam RING/Ubox like zinc-binding domain 143 195 - -
Gma12g00652 1156 MobiDBLite consensus disorder prediction 484 502 - -
Gma12g00652 1156 ProSiteProfiles Zinc finger RING-type profile. 143 191 IPR001841 -
Gma12g00652 1156 MobiDBLite consensus disorder prediction 34 91 - -
Gma12g00652 1156 CDD mRING-HC-C4C4_CNOT4 143 192 IPR039515 -
Gma12g00652 1156 SUPERFAMILY RNA-binding domain, RBD 238 324 IPR035979 GO:0003676
Gma12g00652 1156 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 129 1156 IPR039780 GO:0004842|GO:0030014
Gma12g00652 1156 CDD RRM_CNOT4 239 338 IPR034261 -
Gma12g00652 1156 SUPERFAMILY RING/U-box 134 200 - -
Gma12g00652 1156 Coils Coil 583 603 - -
Gma12g00652 1156 MobiDBLite consensus disorder prediction 828 851 - -
Gma12g00652 1156 MobiDBLite consensus disorder prediction 60 80 - -
Gma12g00652 1156 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 330 IPR000504 GO:0003723
Gma12g00652 1156 SMART rrm2_1 245 326 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00652 Gma-Chr12 5487782 5495855 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00652 K10643 - gmx:100801880 2048.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00652 12 5487782 5495855 Gma12g00652 12 5487782 5495855 ECH
Gma12g00652 12 5487782 5495855 Gma13g02938 13 43939036 43949538 PCT
Gma12g00652 12 5487782 5495855 Gma15g00424 15 3601350 3615154 PCT