Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01331 atgagtgacgaaggagaaagaacttgtcctctctgtgctgaagagatggatttgacagatcagcaattgaagccttgcaaatgcggttatgagATCTGTGTCTGGTGCTGGCACCACATAATGGACATGGCTGAGAAGGATGACACTGAGGGGCGATGCCCAGCATGTCGATCTCCTTATGATAAGGAAAAGATTGTTGGGACAGCTGCAAACTGTGACAGATTGGTGAATGGAGTTAATATTGAGAAAAGGATGAAGACTCAGAAAACGAAGTCTAAATCAACTGATGGGCGTAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGGTTGCCTCTCAATCTTGCAGATGAAGATCTTCTTCAGCGAAGAGAGTATTTTAGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTCGAACAGCAGCTGGTGTCATTCAACAGTTTCCGAATGATACCTGCAGTGTATATATAACTTATTCAAAGGAAGAGGAAGCAATTCGTTGTATTCAAAATGTACATGGTTTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGGAATGTGCCTTGCAGCAATCCGGATTGTCTGTATTTGCATGAGATTGGCTCTCAAGAAGATAGTTTTACCAAGGATGAAATAATTTCAGCATACACTAGAAGTCGAGTTCAACAAATCACTGGTGCCACAAACAATATGCAACGGCGGTCAGGGAATGTATTACCTCCTCCACTGGATGACAATATGAATAGTTCATCTGCAAAGCCTATTGTTAAAAATTCTTCAAGTAACTCTGTTAGCACTGTAAGAGGTTCACCTCCAAATGGAATATATGGGAAAAATATGGCCCTTCCTACTAGTGCTGCATGGGGTACTCAGGTCACAAATTGTCAGCCCCCTGCTGGAGGTCTATCATATCCAAATGGGCCATCCAAGCCAAAACCTGATACAGGCAGCAGCACACTGGTATTTTCTGCAGCTGTTACAGGCTCAATTCAGGCTTCTGATGTTACAAAGAGGCCACCATCGAGTAATGGGAGTCATAGTATGACACCTAGAGTGAAAAGTGAATTGTTGAAACCTGTCAAACAATATAACAATAGTGTGGACAGTCTGGTTAGTGAAGGAGAAAAAACTTTAGCTTCTGATGTTTCTCCTATGCTTGTGAATTTGAACAGGCAGTTGTCTCCTCTACCGTTGTCCCGAGATAGTGATGGAAATTGTACTACAGCAAACACAATAAATTCTACTAACATGATTGGACAGTCTTGTAACTTTGGTCTTGAGGAAGCAATGACTGCTACCAATGAAGAGATTCAGAATTTGTCCAACGAGTTGTCCTCAATTAACATTGATAGAAATGCCGAACATTGCGGTATAACCAAACCTAATAATAGCCCACCTACTGATCATGCATTGATTAAATCTCCTCAAATTCAAGGATCACAGTATAATGTTGACAGATTTAGAGATGAAATAACTACAGATGTGGCTGGTAAAGCTACCTCAGATTTTTTGGTTTGTAATTCTACTGAACAGTGTGATTGGAAATTGGATTCTCAATCTCTAGTAGTATCAGATAATGCTGAAATTGATGATGATGTGACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTGTTTGTCGTTCTTATTTTCCAAAGTCAACCAGATTCCTGCAAGCATCAAACCATTCTAGCCCTTGTCTTCTGCAGCATGGTGAACCTTGTACTGCCATAAATGCAGGTTCTGTATCTGCTGATGATAGAGTTCGAGATGAATCTATGTTACATGCATCCAATATATTATGTAATGGTCACCCTGAAAAATTGGTCAGCAGCAGCTCCTATGGTCTGCTTCATGATGAAAGAAATGGGCATATCATTCAAAGATTAGTTGGTGAAGCAGTTAATTCTGGACATGATATTGCTAGGGATAAAGGTGAAAGTAGTATAATTTCTAATATATTGTCCATGGACTTTGATACCTGGGATGACTCACTAACATCACCTCATAATTTAGCGAAGTTGTTGGGTGACAATACTGATAACCAGCCTGGTCCTTTAAACAAATCTAGTTCTTGGAAAGGTCACAGTAACAATCAATCAAGGTTTTCTTTTGCAAGGCAGGAGGAATCCAAAATCCAAATGTTTGATCCACATGCATCTTATGGTGTCAGCCATCAACGGCCAAACCGTACAGTCTTCCTGAATTGTGCAGAAAGAGACTTGTATATGGATAAGTTGGGCATTGCAAATGGATTTTCTACCAGTAACTTTGAGGAAGCTGAGAATATGGTCAGTGGTCATTCCATTGCATCTTCTAATAAGTTTTCTGCCATCTCAAGAGCACAAGTTTCAGCCCCGCCAGGATTTTCCATTCCAAGCAGGTTGCCACCACCTGGTTTTTCTTCCCATGAGAGAGTGGAGCAGGCTTTTGATTCCATTTCTGGGAATTCTTTGCTTGACCATTCTTCCCTCTTGAGAAATTCATATCAGACACCTTCAGCTGGAAACCTTGGTAGTGCAGGGGACATTGAATTTATGGACCCTGCTATTATGGCAGTTGGCAAAGGGAGACTTCAAGCAAAACCTTAG 2652 0.3944 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGTAANCDRLVNGVNIEKRMKTQKTKSKSTDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFSQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRRSGNVLPPPLDDNMNSSSAKPIVKNSSSNSVSTVRGSPPNGIYGKNMALPTSAAWGTQVTNCQPPAGGLSYPNGPSKPKPDTGSSTLVFSAAVTGSIQASDVTKRPPSSNGSHSMTPRVKSELLKPVKQYNNSVDSLVSEGEKTLASDVSPMLVNLNRQLSPLPLSRDSDGNCTTANTINSTNMIGQSCNFGLEEAMTATNEEIQNLSNELSSINIDRNAEHCGITKPNNSPPTDHALIKSPQIQGSQYNVDRFRDEITTDVAGKATSDFLVCNSTEQCDWKLDSQSLVVSDNAEIDDDVTSFDNQRLKDPEVVCRSYFPKSTRFLQASNHSSPCLLQHGEPCTAINAGSVSADDRVRDESMLHASNILCNGHPEKLVSSSSYGLLHDERNGHIIQRLVGEAVNSGHDIARDKGESSIISNILSMDFDTWDDSLTSPHNLAKLLGDNTDNQPGPLNKSSSWKGHSNNQSRFSFARQEESKIQMFDPHASYGVSHQRPNRTVFLNCAERDLYMDKLGIANGFSTSNFEEAENMVSGHSIASSNKFSAISRAQVSAPPGFSIPSRLPPPGFSSHERVEQAFDSISGNSLLDHSSLLRNSYQTPSAGNLGSAGDIEFMDPAIMAVGKGRLQAKP 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01331 883 MobiDBLite consensus disorder prediction 693 720 - -
Gma11g01331 883 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 881 - -
Gma11g01331 883 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Gma11g01331 883 Coils Coil 442 469 - -
Gma11g01331 883 CDD RRM_CNOT4 105 204 IPR034261 -
Gma11g01331 883 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Gma11g01331 883 MobiDBLite consensus disorder prediction 273 291 - -
Gma11g01331 883 MobiDBLite consensus disorder prediction 329 369 - -
Gma11g01331 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Gma11g01331 883 Gene3D - 111 192 IPR012677 -
Gma11g01331 883 SMART rrm2_1 111 192 IPR003954 GO:0003676
Gma11g01331 883 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Gma11g01331 883 SMART rrm1_1 111 192 IPR000504 GO:0003723
Gma11g01331 883 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Gma11g01331 883 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Gma11g01331 883 MobiDBLite consensus disorder prediction 310 369 - -
Gma11g01331 883 SUPERFAMILY RING/U-box 3 66 - -
Gma11g01331 883 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 881 IPR039780 GO:0004842|GO:0030014
Gma11g01331 883 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Gma11g01331 883 MobiDBLite consensus disorder prediction 273 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01331 Gma-Chr11 11523749 11529682 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01331 K10643 - gmx:100813427 1778.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01331 11 11523749 11529682 Gma11g01331 11 11523749 11529682 ECH
Gma13g02938 13 43939036 43949538 Gma11g01331 11 11523749 11529682 PCT
Gma15g00424 15 3601350 3615154 Gma11g01331 11 11523749 11529682 PCT