Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma15g00380 ATGGCGTCACAAGCGAGCCTCCTTCTTCAGAAGCAGCTCAAAGATCTTTGCAAAAACCCCGTCGATGGCTTTTCTGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTAACTATAATTGGACCTCCCGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCGCCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGTGTACCCCGATGGGCGAGTTTGCATATCAATTCTTCATCCACCCGGTGATGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATACAGTAGAGAGTATAGTATTAAGTATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCAGCAAATGTTGAAGCTGCGAAGGAGTGGAGGGATAGGAGAGATGAATTCAAGAAGAAGGTTAGCCGATGTGTGCGGAAGTCACAAGAAATGTTGTGA 501 0.4511 MASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSELWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDEFKKKVSRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma15g00380 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Gma15g00380 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Gma15g00380 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
Gma15g00380 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
Gma15g00380 166 CDD UBCc 17 159 IPR000608 -
Gma15g00380 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Gma15g00380 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Gma15g00380 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Gma15g00380 166 SMART ubc_7 7 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma15g00380 Gma-Chr15 3204815 3209461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma15g00380 11 131 Miscellaneous Gene Families AT3G17000 32.308 2.64e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma15g00380 K10575 - gmx:100500474 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma15g00380 15 3204815 3209461 Gma15g00380 15 3204815 3209461 ECH
Gma13g02986 13 44371641 44383556 Gma15g00380 15 3204815 3209461 GST
Gma15g00380 15 3204815 3209461 Gma12g00573 12 4818790 4823777 PCT
Gma15g00380 15 3204815 3209461 Gma11g01278 11 10910084 10916386 PCT
Gma12g00573 12 4818790 4823777 Gma15g00380 15 3204815 3209461 PCT
Gma11g01278 11 10910084 10916386 Gma15g00380 15 3204815 3209461 PCT