Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g02986 ATGGCGTCACAAGCAAGCCTCCTCCTTCAGAAGCAGCTCAAAGATCTTTGCAAGAACCCCGTCGATGGCTTTTCCGCCGGTTTGGTCGACGAAACCAACATTTTTGAATGGAGTGTGACTATAATTGGACCTCCCGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTATGAGCTTTCCACCCAACTACCCAAATAGTCCACCATCAGTGAAATTTACCTCAGAGTTATGGCATCCCAATGTGTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATACAGTAGAGAGTATAGTATTAAGTATCATATCGATGCTTTCTAGTCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCGAAGGAGTGGAGAGATAGGAGAGATGAATTCAAGAAGAAGTGCCATTTGTCTTGGAAAAACCAACTGTATTCTAAGTGCTTGGCACTTCTTTACCTGTATATGGCTGTTTTCCCTAGCGCTTCAGTACTTTGTTTACTTGGATGTCGCGCCGGTTCATTGACTTACAGCGACGAAGGAGGATTGATCCATAATTGGGGATGCGCTCACCTTGCAAACTGTTGCAATCCTATTTCAGTTTACATGGGAGACACGGTGGATTATTCTTACTTGAGCAGCATCCCAAAACCAGGCAGTGTCGTGGCTAAGAATAAAGCATACAAAAATCTGCTAATTGCATCACTTCCTAAAAGTTTTGTACAGAGAAACCATGGGCATGTCATTTCACTGATCCGTGGCCGCTTTGGAAGTAGAGATATGAGTGGTATCACATTTTTTTTACTTAAAGTTGCTGCTTTAGAGATCATTAGGAGGTTCTCCAAGAGGAGATGCCCATGTGTATGGCGAGGCCTTCAGGCTCTACAAATCCTATGTTATCCACCATTTAAATGGATTCAGAGGTGGGCACCCTTCAAGAGTTTGGTTGACGGCATGCAGGTCCTATCAAGACCATTGCTAGCCCTTTCAATTGCAACATTATTTCCTGATCTATCAAAATGTAGTGATGGCAAGTCAGATTGTAGTACTGATTCACAAGATGCAGTTGCATACTCAGAATTATCTCCTTTACAGGTTGATTTGAATACAAGCCAGTGTTTGACAGATCCTAAAATTTTAGAATCTGAGAAATGGTTGACTCAACTCTATCAAGAGCTTGAAAATCAAGGGCTTAGTTTACCAGAAAGAATCAATGATGATGAGCTTCGGAGATTTTATGCAGCTTCTAATAATGATTTTTCATGCTTCCTTACCTCAATCAAGAAGACCATACGATGGCGAGAGACTTACAGAATTCTTTCAGAAGAAGAACTGAAAATGTCATCAAAAATGGTGTTCTGGCATGGGTCTGATGTGGGGCAGAGACCTTGCCTAATCATTAGGTTTGGGTTAGCCTGCAGTACATTGACATCTGAAGATAGACCTCGATTTGCTCAGGCAGTCATATCACAGGTAGAATATGGAGTCCTGCACTTGGTTGATGCAGACAACCCGCAAATTACGGTGTTGGTGGACTGTGAAGGGTTGTCTCCAGTGAGAATTCCCATGCAAATAATCAGATCCTGTTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGGATTTGAAGCCTGCTACGAGAAACAAGTTGAAAATAGAAGGGGAGATGCATCAGAAAGTTCTTTCTGACTATATGCCAACACTGCCTTCATATCTTGGAGGCTGCTGCACCTGCATGAAATGCTCCAACATTGGCCAGGGGGATATGCTGCAAACTTATGCAACTGGGACCAGCAGGAGAGATGGGTTGGAGGATACCAGTGACAGTGACAATGACAATGAGGATTCTCCAACATTGCATCCTTGCGATGAATTAGAAGGCAACTTATATGGTAATTATGACCAGTTGTTGAGAACTGCTATAGTAGGCATTCTTATATTTTGGGTTTTTATAGCTCTTGGTGCTGTAGTATTTGATCCCAGTAATCGCCACTAG 2118 0.4273 MASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSELWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDEFKKKCHLSWKNQLYSKCLALLYLYMAVFPSASVLCLLGCRAGSLTYSDEGGLIHNWGCAHLANCCNPISVYMGDTVDYSYLSSIPKPGSVVAKNKAYKNLLIASLPKSFVQRNHGHVISLIRGRFGSRDMSGITFFLLKVAALEIIRRFSKRRCPCVWRGLQALQILCYPPFKWIQRWAPFKSLVDGMQVLSRPLLALSIATLFPDLSKCSDGKSDCSTDSQDAVAYSELSPLQVDLNTSQCLTDPKILESEKWLTQLYQELENQGLSLPERINDDELRRFYAASNNDFSCFLTSIKKTIRWRETYRILSEEELKMSSKMVFWHGSDVGQRPCLIIRFGLACSTLTSEDRPRFAQAVISQVEYGVLHLVDADNPQITVLVDCEGLSPVRIPMQIIRSCSSLLKDHFPNRLGCMFVIRLPANVHVIAQTFIQDLKPATRNKLKIEGEMHQKVLSDYMPTLPSYLGGCCTCMKCSNIGQGDMLQTYATGTSRRDGLEDTSDSDNDNEDSPTLHPCDELEGNLYGNYDQLLRTAIVGILIFWVFIALGAVVFDPSNRH 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g02986 705 Gene3D - 399 646 IPR036865 -
Gma13g02986 705 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 461 621 IPR001251 -
Gma13g02986 705 PANTHER SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN 239 703 - -
Gma13g02986 705 Pfam Ubiquitin-conjugating enzyme 9 156 IPR000608 -
Gma13g02986 705 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Gma13g02986 705 SMART sec14_4 465 618 IPR001251 -
Gma13g02986 705 MobiDBLite consensus disorder prediction 639 662 - -
Gma13g02986 705 CDD UBCc 17 154 IPR000608 -
Gma13g02986 705 SUPERFAMILY UBC-like 3 159 IPR016135 -
Gma13g02986 705 CDD SEC14 461 615 IPR001251 -
Gma13g02986 705 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Gma13g02986 705 SMART ubc_7 7 164 - -
Gma13g02986 705 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Gma13g02986 705 Pfam CRAL/TRIO domain 468 615 IPR001251 -
Gma13g02986 705 SUPERFAMILY CRAL/TRIO domain 468 620 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g02986 Gma-Chr13 44371641 44383556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g02986 11 131 Miscellaneous Gene Families AT3G17000 33.077 7.83e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g02986 - - gmx:100786191 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g02986 13 44371641 44383556 Gma13g02986 13 44371641 44383556 ECH
Gma13g02986 13 44371641 44383556 Gma15g00380 15 3204815 3209461 GST
Gma13g02986 13 44371641 44383556 Gma12g00573 12 4818790 4823777 PCT
Gma13g02986 13 44371641 44383556 Gma11g01278 11 10910084 10916386 PCT
Gma12g00573 12 4818790 4823777 Gma13g02986 13 44371641 44383556 PCT
Gma11g01278 11 10910084 10916386 Gma13g02986 13 44371641 44383556 PCT