Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g01278 ATGGCATCTCAGGCTAGCCTTCTCCTTCAAAAGCAGCTCAAAGATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTTGAATGGAGTGTCACCATAATTGGGCCGCCCGATACTCTCTACGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACGGTAGAGAGTATAGTATTGAGTATCATATCAATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAAAGGAGTGGAGAGATAGGAGGGATGATTTCAAGAAAAAGGTTAGCCGATGCGTAAGGAAGTCACAAGAAATGTTGTGA 501 0.4511 MASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g01278 166 Gene3D Ubiquitin Conjugating Enzyme 2 166 IPR016135 -
Gma11g01278 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 166 - -
Gma11g01278 166 Pfam Ubiquitin-conjugating enzyme 9 158 IPR000608 -
Gma11g01278 166 SMART ubc_7 7 164 - -
Gma11g01278 166 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 164 IPR000608 -
Gma11g01278 166 CDD UBCc 17 159 IPR000608 -
Gma11g01278 166 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Gma11g01278 166 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 2 166 - -
Gma11g01278 166 SUPERFAMILY UBC-like 3 162 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g01278 Gma-Chr11 10910084 10916386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g01278 11 131 Miscellaneous Gene Families AT3G17000 32.308 9.37e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g01278 K10575 - gmx:100305813 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma11g01278 11 10910084 10916386 Gma11g01278 11 10910084 10916386 ECH
Gma11g01278 11 10910084 10916386 Gma12g00573 12 4818790 4823777 ECH
Gma12g00573 12 4818790 4823777 Gma11g01278 11 10910084 10916386 GST
Gma13g02986 13 44371641 44383556 Gma11g01278 11 10910084 10916386 PCT
Gma15g00380 15 3204815 3209461 Gma11g01278 11 10910084 10916386 PCT
Gma11g01278 11 10910084 10916386 Gma13g02986 13 44371641 44383556 PCT
Gma11g01278 11 10910084 10916386 Gma15g00380 15 3204815 3209461 PCT