Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00573 ATGGCGGCATCTCAGGCAAGCCTTCTCCTTCAAAAGCAGCTCAAAGATCTTTGCAAAAACCCCGTCGACGGCTTCTCTGCCGGTTTGGTCGATGAAACCAACATTTTCGAATGGAGTGTCACCATAATTGGACCGCCCGATACTCTTTACGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTTAAGTTCACTTCAGAGATATGGCATCCCAATGTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATACGGTAGAGAGTATAGTATTGAGTATCATATCGATGCTTTCCAGCCCTAATGATGAATCTCCTGCAAATGTTGAAGCTGCAAAAGAGTGGAGAGATAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGATGTGTAAGGAAGTCACAAGAAATGTTGTGA 504 0.4484 MAASQASLLLQKQLKDLCKNPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPSVKFTSEIWHPNVYPDGRVCISILHPPGEDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00573 167 Pfam Ubiquitin-conjugating enzyme 10 159 IPR000608 -
Gma12g00573 167 CDD UBCc 18 160 IPR000608 -
Gma12g00573 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 13 3 167 - -
Gma12g00573 167 SMART ubc_7 8 165 - -
Gma12g00573 167 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 79 94 IPR023313 -
Gma12g00573 167 SUPERFAMILY UBC-like 4 163 IPR016135 -
Gma12g00573 167 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 165 IPR000608 -
Gma12g00573 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 167 - -
Gma12g00573 167 Gene3D Ubiquitin Conjugating Enzyme 2 167 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00573 Gma-Chr12 4818790 4823777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00573 12 132 Miscellaneous Gene Families AT3G17000 32.308 8.62e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00573 K10575 - gmx:100499900 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00573 12 4818790 4823777 Gma12g00573 12 4818790 4823777 ECH
Gma11g01278 11 10910084 10916386 Gma12g00573 12 4818790 4823777 ECH
Gma12g00573 12 4818790 4823777 Gma11g01278 11 10910084 10916386 GST
Gma13g02986 13 44371641 44383556 Gma12g00573 12 4818790 4823777 PCT
Gma15g00380 15 3204815 3209461 Gma12g00573 12 4818790 4823777 PCT
Gma12g00573 12 4818790 4823777 Gma13g02986 13 44371641 44383556 PCT
Gma12g00573 12 4818790 4823777 Gma15g00380 15 3204815 3209461 PCT